Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5299g00004 ATGAATGTGACAAATAAGCCAAACCCAGATGGTTCCACCAATGGGTTTCAGTCTCAGCTTCAACAGCAACACAGTAATTCTTGGGAGGGATCATCTACACATCCACCCACTAAGCCTTATCCTGCACCAACGGCTAGCTACCAGGACATTGTTCGTGATGAAAACCTCTTCTGGGAAAAGCTCCAAGCTTTTCATCAATCACTTGGTACCAAATTTAAGGTTGTTATTGTGGGAGGAAAGTCACTGGATCTACATCGCCTTTTTGTGGAAGTTACATCTCGGGGTGGGATTGAAAAGGTGATTATTGATCGTAAGTGGAAGGAAGTGATTCTGGCCTTCAATTTCAAAGATACCATAACGAGTGCATCATTTGTGGTGCGAAAATCCTATCTATCCATGCTTTATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCTTTCCTCCCCAAACACCTGATATTATGATTAGAGGCCAACCAGGCCTTTCCAATGGCTCCACAACCATTCTCGAGGTTACTGATGTGAATGATTCACCTGTTCAGGTTACTCCAGTTCAGGGATATGATGCGGTGCTTTCTGGAACAATTGATGTGAAATTTGACGGTGGATACGTAGTCACAGTGACTGTGGGTTCTGAGGAGCTGAAGGTGTCCTGTTTCATGTTCCAGATAACATGTCCCAGAGTTCTCATACGGAAGGCAATCCTAGCTCACAGAATCATGGTGAAGGCACATCTGGGTCACAGAGTCGAAAGAGAGCAAAATATACACCACGTGATCCATTCCGGCCGAAGTCAAACAGGAGCGGTTACAACTTTTTCTTTGCTGAGAATTATGCCATGCTGA 849 0.4441 MNVTNKPNPDGSTNGFQSQLQQQHSNSWEGSSTHPPTKPYPAPTASYQDIVRDENLFWEKLQAFHQSLGTKFKVVIVGGKSLDLHRLFVEVTSRGGIEKVIIDRKWKEVILAFNFKDTITSASFVVRKSYLSMLYHFEQVYYFGRQGFPPQTPDIMIRGQPGLSNGSTTILEVTDVNDSPVQVTPVQGYDAVLSGTIDVKFDGGYVVTVTVGSEELKVSCFMFQITCPRVLIRKAILAHRIMVKAHLGHRVEREQNIHHVIHSGRSQTGAVTTFSLLRIMPC 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5299g00004 282 SMART ARID_2 48 138 - -
Vium5299g00004 282 SMART bright_3 52 143 IPR001606 GO:0003677
Vium5299g00004 282 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 20 218 - -
Vium5299g00004 282 ProSiteProfiles ARID domain profile. 51 142 IPR001606 GO:0003677
Vium5299g00004 282 CDD ARID_HMGB9-like 53 138 IPR045303 GO:0003677
Vium5299g00004 282 MobiDBLite consensus disorder prediction 1 45 - -
Vium5299g00004 282 SUPERFAMILY ARID-like 48 152 IPR036431 GO:0003677
Vium5299g00004 282 Gene3D - 42 149 IPR036431 GO:0003677
Vium5299g00004 282 MobiDBLite consensus disorder prediction 1 34 - -
Vium5299g00004 282 Pfam ARID/BRIGHT DNA binding domain 55 138 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5299g00004 Vium-Chr5299 46170 49073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5299g00004 47 217 ARID Transcription Factor Family AT1G55650 52.023 5.56e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium5299g00004 ARID 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5299g00004 - - vum:124840410 573.933