Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5299g00003 ATGAATGTGACAAATAAGCCAAACCCAGATGGTTCCACCAATGGGTTTCAGTCTCAGCTTCAACAGCAACACAGTAATTCTTGGGAGGGATCATCTACACATCCACCCACTAAGCCTTATCCTGCACCAACGGCTAGCTACCAGGACATTGTTCGTGATGAAAACCTCTTCTGGGAAAAGCTCCAAGCTTTTCATCAATCACTTGGTACCAAATTTAAGGTTGTTATTGTGGGAGGAAAGTCACTGGATCTACATCGCCTTTTTGTGGAAGTTACATCTCGGGGTGGGATTGAAAAGGTGATTATTGATCGTAAGTGGAAGGAAGTGATTCTGGCCTTCAATTTCAAAGATACCATAACGAGTGCATCATTTGTGGTGCGAAAATCCTATCTATCCATGCTTTATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCTTTCCTCCCCAAACACCTGATATTATGATTAGAGGCCAACCAGGCCTTTCCAATGGCTCCACAACCATTCTCGAGGTTACTGATGTGAATGATTCACCTGTTCAGGTTACTCCAGTTCAGGGATATGATGCGGTGCTTTCTGGAACAATTGATGTGAAATTTGACGGTGGATACGTAGTCACAGTGACTGTGGGTTCTGAGGAGCTGAAAGGTGTCCTGTTTCATGTTCCAGATAACATGTCCCAGAGTTCTCATACGGAAGGCAATCCTAGCTCACAGAATCATGGTGAAGGCACATCTGGGTCACAGAGTCGAAAGAGAGCAAAATATACACCACGTGATCCATTCCGGCCGAAGTCAAACAGGAGCGGTTACAACTTTTTCTTTGCTGAGAATTATGCCATGCTGAAGCCCTCTTATCACGGGCAAGAGAGAGCTATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGGTGAAAGATAAGGAAAGATATAGAACTGAACTGATGGAATACAAATCCAACAATTCAACTCCAAATACTCAATAG 1026 0.4347 MNVTNKPNPDGSTNGFQSQLQQQHSNSWEGSSTHPPTKPYPAPTASYQDIVRDENLFWEKLQAFHQSLGTKFKVVIVGGKSLDLHRLFVEVTSRGGIEKVIIDRKWKEVILAFNFKDTITSASFVVRKSYLSMLYHFEQVYYFGRQGFPPQTPDIMIRGQPGLSNGSTTILEVTDVNDSPVQVTPVQGYDAVLSGTIDVKFDGGYVVTVTVGSEELKGVLFHVPDNMSQSSHTEGNPSSQNHGEGTSGSQSRKRAKYTPRDPFRPKSNRSGYNFFFAENYAMLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGVKDKERYRTELMEYKSNNSTPNTQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5299g00003 341 CDD HMG-box_AtHMGB9-like 265 331 - -
Vium5299g00003 341 SMART ARID_2 48 138 - -
Vium5299g00003 341 SMART bright_3 52 143 IPR001606 GO:0003677
Vium5299g00003 341 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Vium5299g00003 341 MobiDBLite consensus disorder prediction 225 268 - -
Vium5299g00003 341 MobiDBLite consensus disorder prediction 225 253 - -
Vium5299g00003 341 MobiDBLite consensus disorder prediction 1 34 - -
Vium5299g00003 341 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Vium5299g00003 341 SUPERFAMILY HMG-box 264 335 IPR036910 -
Vium5299g00003 341 SUPERFAMILY ARID-like 48 152 IPR036431 GO:0003677
Vium5299g00003 341 Gene3D - 42 149 IPR036431 GO:0003677
Vium5299g00003 341 ProSiteProfiles ARID domain profile. 51 142 IPR001606 GO:0003677
Vium5299g00003 341 CDD ARID_HMGB9-like 53 138 IPR045303 GO:0003677
Vium5299g00003 341 SMART hmgende2 264 333 IPR009071 -
Vium5299g00003 341 Gene3D High mobility group box domain 248 340 IPR036910 -
Vium5299g00003 341 MobiDBLite consensus disorder prediction 1 45 - -
Vium5299g00003 341 Pfam ARID/BRIGHT DNA binding domain 55 138 IPR001606 GO:0003677
Vium5299g00003 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 21 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5299g00003 Vium-Chr5299 41500 45327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5299g00003 45 340 ARID Transcription Factor Family AT3G13350 52.365 3.86e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium5299g00003 ARID 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5299g00003 - - gmx:100793029 583.948