Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5299g00002 ATGAATGTGACAAATAAGCCAAACCCAGATGGTTCCACCAATGGGTTTCAGTCTCAGCTTCAACAGCAACACAGTAATTCTTGGGAGGGATCATCTACACATCCACCCACTAAGCCTTATCCTGCACCAACGGCTAGCTACCAGGACATTGTTCGTGATGAAAACCTCTTCTGGGAAAAGCTCCAAGCTTTTCATCAATCACTTGGTACCAAATTTAAGGTTGTTATTGTGGGAGGAAAGTCACTGGATCTACATCGCCTTTTTGTGGAAGTTACATCTCGGGGTGGGATTGAAAAGGTGATTATTGATCGTAAGTGGAAGGAAGTGATTCTGGCCTTCAATTTCAAAGATACCATAACGAGTGCATCATTTGTGGTGCGAAAATCCTATCTATCCATGCTTTATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCTTTCCTCCCCAAACACCTGTTACTCCAGTTCAGGGATATGATGCGGTGCTTTCTGGAACAATTGATGTGAAATTTGACGGTGGATACGTAGTCACAGTGACTGTGGGTTCTGAGGAGCTGAAAGGTGTCCTGTTTCATGTTCCAGATAACATGTCCCAGAGTTCTCATACGGAAGGCAATCCTAGCTCACAGAATCATGGTGAAGGCACATCTGGGTCACAGAGTCGAAAGAGAGCAAAATATACACCACGTGATCCATTCCGGCCGAAGTCAAACAGGAGCGGTTACAACTTTTTCTTTGCTGAGAATTATGCCATGCTGAAGCCCTCTTATCACGGGCAAGAGAGAGCTATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGGTGAAAGATAAGGAAAGATATAGAACTGAACTGATGGAATACAAATCCAACAATTCAACTCCAAATACTCAATAG 939 0.4334 MNVTNKPNPDGSTNGFQSQLQQQHSNSWEGSSTHPPTKPYPAPTASYQDIVRDENLFWEKLQAFHQSLGTKFKVVIVGGKSLDLHRLFVEVTSRGGIEKVIIDRKWKEVILAFNFKDTITSASFVVRKSYLSMLYHFEQVYYFGRQGFPPQTPVTPVQGYDAVLSGTIDVKFDGGYVVTVTVGSEELKGVLFHVPDNMSQSSHTEGNPSSQNHGEGTSGSQSRKRAKYTPRDPFRPKSNRSGYNFFFAENYAMLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGVKDKERYRTELMEYKSNNSTPNTQ 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5299g00002 312 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 236 303 IPR009071 -
Vium5299g00002 312 MobiDBLite consensus disorder prediction 198 239 - -
Vium5299g00002 312 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 21 309 - -
Vium5299g00002 312 SMART ARID_2 48 138 - -
Vium5299g00002 312 SMART bright_3 52 143 IPR001606 GO:0003677
Vium5299g00002 312 Gene3D - 42 148 IPR036431 GO:0003677
Vium5299g00002 312 MobiDBLite consensus disorder prediction 198 224 - -
Vium5299g00002 312 SUPERFAMILY HMG-box 235 306 IPR036910 -
Vium5299g00002 312 CDD HMG-box_AtHMGB9-like 236 302 - -
Vium5299g00002 312 MobiDBLite consensus disorder prediction 1 34 - -
Vium5299g00002 312 SMART hmgende2 235 304 IPR009071 -
Vium5299g00002 312 ProSiteProfiles ARID domain profile. 51 142 IPR001606 GO:0003677
Vium5299g00002 312 CDD ARID_HMGB9-like 53 138 IPR045303 GO:0003677
Vium5299g00002 312 Pfam ARID/BRIGHT DNA binding domain 55 138 IPR001606 GO:0003677
Vium5299g00002 312 MobiDBLite consensus disorder prediction 1 45 - -
Vium5299g00002 312 Gene3D High mobility group box domain 219 311 IPR036910 -
Vium5299g00002 312 Pfam HMG (high mobility group) box 236 303 IPR009071 -
Vium5299g00002 312 SUPERFAMILY ARID-like 48 153 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5299g00002 Vium-Chr5299 41500 45327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5299g00002 45 311 ARID Transcription Factor Family AT3G13350 51.724 3.39e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium5299g00002 ARID 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5299g00002 - - gmx:100793029 533.487