Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5298g00003 ATGCTTCTAACGGTAGTGCCATCAAAATGGGTTGAGACCCGTGAGCCAACCCAGCTCATCACGGNGCTTCCAAATGTGGTTGAGTATGCCATTGTTGCTCTGGGGATAATGGCTGCCGGTGGGGTCTTTTCTGGGGCTAATCCAGCTTCTCATGTCTCAGAAATTAAGAAACAGAAAGAGTCTGCAGATGCCAAGATATTTGTCACAGATGCCACAAACTATCAAAAGGTGAAGGGTCTAGAGGTACCTGTTATTGTGGTAGGAGATGAAGTTGTTGAAGGTGGCATGAATTGGAAGAAGTTGATTGAAGCAGCAGAGAGAGGAGGTGGTGATTTTTCCAAGGAACCTGTTGAACAGAATGATCTTTGTGCCATGCCATTCTCATCAGGAACCACAGGAATGTCAAAGGGTGTGATGCTCACTCACAGAAATCTGGTGGCTAATCTCTGCTCTACACTCTTCAGTGTGACAAGGGAAATGGAGGGCAAGGTCACCACACTAGGCCTCATTCCCTTCTTTCACATCTATGGCATCACTGGAATATGTTGTGCCACTCTTAGGAGCAAAGGGAAAGTTGTGGTTATGGGAAGGTTTGAGTTGAAGAAGTTTCTCAATGCCTTGATCACACATGAGGTCACATTTGCACCCATTGTACCCCCTATCATTCTCAGCTTGGTCAAGAATCCCATAGTTGATGGATTTGACCTCACCAAGCTCAAACTCCAAGCTGTTATGACTGCAGCAGCACCACTTGCTCCAGAACTTCTTAATGCTTTTCAACACAAGTTCCCTGGTGTTTCTGTCCATGAGGCATATGGACTTACTGAGCATAGCTGCATCACACTCACTCTTGCAACAAAAGGATTGGGCAGTGTTCATAAAAATTCAGTGGGATTCATCCTCCCAAATTTGGAAGTCAAGTTTATTGATCCTGACACTGGTCGATCCCTTCCTAGGAACACACCCGGGGAACTTTGTGTGAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGTGGATGAGACTGCACATACCATTGACAAGAATGGATGGCTTCACACAGGTGACGTAGGATTCATAGATGATGAAGAAAATGTCTTCATCATTGATCGTATCAAAGAGTTGATCAAATACAAAGGTTTCCAAGTTGCTCCTGCTGAGTTAGAGGCCATTTTGCTGAGTCATTCATCAGTTGAAGATGCAGCTGTAGTGCCAATACCAGATGAAGATGCAGGGGAAATCCCAGGTGCAAGTGTGGTTTTGATCCCTGGTGCAAAGGAAAGTGAGGAGGACATAATGAACTATGTTGCCAACAATGCTGCAAATTACAAGAAAGTGAGAGTGGTGCACTTTGTGGAAAGCATACCAAAGTCACCCTCTGGAAAAATAATGAGGAGGCTCATCAAAGACAAGATGATTCAAAAGATAAAGACAACTTCCTCAACAAAATCTCAGAATGTCTAA 1467 0.4417 MLLTVVPSKWVETREPTQLITXLPNVVEYAIVALGIMAAGGVFSGANPASHVSEIKKQKESADAKIFVTDATNYQKVKGLEVPVIVVGDEVVEGGMNWKKLIEAAERGGGDFSKEPVEQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFSVTREMEGKVTTLGLIPFFHIYGITGICCATLRSKGKVVVMGRFELKKFLNALITHEVTFAPIVPPIILSLVKNPIVDGFDLTKLKLQAVMTAAAPLAPELLNAFQHKFPGVSVHEAYGLTEHSCITLTLATKGLGSVHKNSVGFILPNLEVKFIDPDTGRSLPRNTPGELCVRSQCVMQGYYKQVDETAHTIDKNGWLHTGDVGFIDDEENVFIIDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPIPDEDAGEIPGASVVLIPGAKESEEDIMNYVANNAANYKKVRVVHFVESIPKSPSGKIMRRLIKDKMIQKIKTTSSTKSQNV 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5298g00003 488 Pfam AMP-binding enzyme 22 379 IPR000873 -
Vium5298g00003 488 Pfam AMP-binding enzyme C-terminal domain 388 463 IPR025110 -
Vium5298g00003 488 FunFam 4-coumarate--CoA ligase 2 375 476 - -
Vium5298g00003 488 Gene3D - 13 374 IPR042099 -
Vium5298g00003 488 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 22 472 - -
Vium5298g00003 488 SUPERFAMILY Acetyl-CoA synthetase-like 22 477 - -
Vium5298g00003 488 ProSitePatterns Putative AMP-binding domain signature. 125 136 IPR020845 -
Vium5298g00003 488 Gene3D - 375 478 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5298g00003 Vium-Chr5298 9477 12913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5298g00003 14 474 Monolignol Biosynthesis Gene Families AT1G62940 71.490 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5298g00003 K01904 - gmx:100811418 809.29