Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5298g00002 ATGGGAAGCAGCTACGTGGAAAGTTTGGGAGATGTGGAGGAACATGTCTTTCGTAGCCAGTACTCACCCGTCCCTATCCCTGACAATGTGACTTTGCCAGAATATGTGCTCCAAAATGCTGAGCTCTATGCTGACAAGGTCGCATTCGTGGATGCTGTAACTGGAAAACAGGTGACTTACGGTGATGTGGTGAGGGATGTAAAGAGGTTTTCAAAGGCCTTAAGATCTCTTGGTTTGAGGAAAGGGCATGTTGTCATTGTGTTGCTTCCAAATGTGGTTGAGTATGCCATTGTTGCTCTGGGGATAATGGCTGCCGGTGGGGTCTTTTCTGGGGCTAATCCAGCTTCTCATGTCTCAGAAATTAAGAAACAGAAAGAGTCTGCAGATGCCAAGATATTTGTCACAGATGCCACAAACTATCAAAAGGTGAAGGGTCTAGAGGTACCTGTTATTGTGGTAGGAGATGAAGTTGTTGAAGGTGGCATGAATTGGAAGAAGTTGATTGAAGCAGCAGAGAGAGGAGGTGGTGATTTTTCCAAGGAACCTGTTGAACAGAATGATCTTTGTGCCATGCCATTCTCATCAGGAACCACAGGAATGTCAAAGGGTGTGATGCTCACTCACAGAAATCTGGTGGCTAATCTCTGCTCTACACTCTTCAGTGTGACAAGGGAAATGGAGGGCAAGGTCACCACACTAGGCCTCATTCCCTTCTTTCACATCTATGGCATCACTGGAATATGTTGTGCCACTCTTAGGAGCAAAGGGAAAGTTGTGGTTATGGGAAGGTTTGAGTTGAAGAAGTTTCTCAATGCCTTGATCACACATGAGGTCACATTTGCACCCATTGTACCCCCTATAATTCTCAGCTTGGTCAAGAATCCCATAGTTGATGGATTTGACCTCACCAAGCTCAAACTCCAAGCTGTTATGACTGCAGCAGCACCACTTGCTCCAGAACTTCTTAATGCTTTTCAACACAAGTTCCCTGGTGTTTCTGTCCATGAGGCATATGGACTTACTGAGCATAGCTGCATCACACTCACTCTTGCAACAAAAGGATTGGGCAGTGTTCATAAAAATTCAGTGGGATTCATCCTCCCAAATTTGGAAGTCAAGTTTATTGATCCTGACACTGGTCGATCCCTTCCTAGGAACACACCCGGGGAACTTTGTGTGAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGTGGATGAGACTGCACATACCATTGACAAGAATGGATGGCTTCACACAGGTGACGTAGGATTCATAGATGATGAAGAAAATGTCTTCATCATTGATCGTATCAAAGAGTTGATCAAATACAAAGGTTTCCAAGTTGCTCCTGCTGAGTTAGAGGCCATTTTGCTGAGTCATTCATCAGTTGAAGATGCAGCTGTAGTGCCAATACCAGATGAAGATGCAGGGGAAATCCCAGGTGCAAGTGTGGTTTTGATCCCTGGTGCAAAGGAAAGTGAGGAGGACATAATGAACTATGTTGCCAACAATGCTGCAAATTACAAGAAAGTGAGAGTGGTGCACTTTGTGGAAAGCATACCAAAGTCACCCTCTGGAAAAATAATGAGGAGGCTCATCAAAGACAAGATGATTCAAAAGATAAAGACAACTTCCTCAACAAAATCTCAGAATGTCTAA 1665 0.442 MGSSYVESLGDVEEHVFRSQYSPVPIPDNVTLPEYVLQNAELYADKVAFVDAVTGKQVTYGDVVRDVKRFSKALRSLGLRKGHVVIVLLPNVVEYAIVALGIMAAGGVFSGANPASHVSEIKKQKESADAKIFVTDATNYQKVKGLEVPVIVVGDEVVEGGMNWKKLIEAAERGGGDFSKEPVEQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFSVTREMEGKVTTLGLIPFFHIYGITGICCATLRSKGKVVVMGRFELKKFLNALITHEVTFAPIVPPIILSLVKNPIVDGFDLTKLKLQAVMTAAAPLAPELLNAFQHKFPGVSVHEAYGLTEHSCITLTLATKGLGSVHKNSVGFILPNLEVKFIDPDTGRSLPRNTPGELCVRSQCVMQGYYKQVDETAHTIDKNGWLHTGDVGFIDDEENVFIIDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPIPDEDAGEIPGASVVLIPGAKESEEDIMNYVANNAANYKKVRVVHFVESIPKSPSGKIMRRLIKDKMIQKIKTTSSTKSQNV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5298g00002 554 Gene3D - 441 544 IPR045851 -
Vium5298g00002 554 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 13 538 - -
Vium5298g00002 554 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Vium5298g00002 554 Gene3D - 14 440 IPR042099 -
Vium5298g00002 554 CDD 4CL 26 533 - -
Vium5298g00002 554 FunFam Long-chain-fatty-acid--CoA ligase FadD 18 440 - -
Vium5298g00002 554 SUPERFAMILY Acetyl-CoA synthetase-like 21 543 - -
Vium5298g00002 554 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Vium5298g00002 554 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Vium5298g00002 554 Pfam AMP-binding enzyme 38 445 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5298g00002 Vium-Chr5298 4581 7713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5298g00002 14 540 Monolignol Biosynthesis Gene Families AT1G62940 72.023 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5298g00002 K01904 - gmx:100811418 940.258