Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5290g00018 ATGGAAAAGGAACCTCTGCTTCCATATTTCAGCCCCAGAAAGAAGCCCCTGGCATTGTCACCGCTATGTCCCTTGCCAGAGCACGAGGACATGGTTCTTCCAATGACCCCGATGGAATTCAAGGACCGCCTCATCTTTGGTCCTGCTTGTGCTACCCCAAGGGACCCTACACCTTTGGCCGATGCCTTAATACTTCCCCTCAATTCCCCAAAATGTTCCTCTTCTACGTCGCAGGACTGTGCATCGCCATCACGGTTTGATTCCCAGTCGCAACAACCATCCGCTTGGCTCCTTGACCCCAATTACTCCTGGCGGAAAACAAACCTTCATCGCTCCAAAACCGCGCCTGCCATGGCGGTGATCAGCGATTTCAACCCCCAATCCTCTGTGCCAAGGCCGCAATTTGGCAGCCAGAGTATTGTGCGCCAGGGTGTGATTCTTCTTGTTCTTTATTTGGCATTAGGGGTTGTCATTTATTGGTTCAATCGTCATAATTTTTCAGCTTCCGAGACTCATCCTGTAGTTGATGCATTGTATTTTTGTATAGTCACAATGTGCACAATAGGATATGGTGACATCACTCCGAATAGCACAGCCACTAAACTTTTCTCTATATTGTTTGTGTTGGTGGGGTTTGGATTTATAGACATATTGCTGAGTGGGATGGTTAGCTATGTGCTTGATTTGCAAGAGAATCATATGTTGACGGCAGTGAAGGGGAGGAGGGGTGAGAAGGATGGAAAGTCTTATATAATTGATGTGAAGAAAGGGAGGATGAGGATTCGATTGAAGGTGGCGCTGGCGTTGGGAGTTGTGGTGATTTGTATTGGGGTAGGTGTGGCGGTTATGCATTTTGTGGAGAAGCTTGGTTGGTTGGACTCTTTTTATCTTTCAGTTATGTCGGTTACTACGGTTGGGTATGGAGACCATGCTTTCAAGACCATGCATGGCAGGATCTTTGCTGCAATTTGGTTGCTTGTGTCTACTCTTGCCGTGGCTCGAGCGTTCCTCTATTTGGCTGAGGCAAGAGTGGATAAGCGGCACAGGATGATGGCGAAGTGGATTCTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCAGCAGACATAGACAACAATGGCTTTGTGAGGTATGGACTGTTTCATTTCGATCTCATAAGAAGTCAGTGA 1170 0.4726 MEKEPLLPYFSPRKKPLALSPLCPLPEHEDMVLPMTPMEFKDRLIFGPACATPRDPTPLADALILPLNSPKCSSSTSQDCASPSRFDSQSQQPSAWLLDPNYSWRKTNLHRSKTAPAMAVISDFNPQSSVPRPQFGSQSIVRQGVILLVLYLALGVVIYWFNRHNFSASETHPVVDALYFCIVTMCTIGYGDITPNSTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQENHMLTAVKGRRGEKDGKSYIIDVKKGRMRIRLKVALALGVVVICIGVGVAVMHFVEKLGWLDSFYLSVMSVTTVGYGDHAFKTMHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVRYGLFHFDLIRSQ 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5290g00018 389 PRINTS Two pore domain K+ channel signature 183 211 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium5290g00018 389 PRINTS Two pore domain K+ channel signature 303 312 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium5290g00018 389 FunFam Two-pore potassium channel 3 248 362 - -
Vium5290g00018 389 Gene3D - 139 239 - -
Vium5290g00018 389 FunFam Two-pore potassium channel 5 129 239 - -
Vium5290g00018 389 Pfam Ion channel 271 340 IPR013099 -
Vium5290g00018 389 Pfam Ion channel 146 226 IPR013099 -
Vium5290g00018 389 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 145 363 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium5290g00018 389 Gene3D - 240 363 - -
Vium5290g00018 389 SUPERFAMILY Voltage-gated potassium channels 255 359 - -
Vium5290g00018 389 SUPERFAMILY Voltage-gated potassium channels 140 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5290g00018 Vium-Chr5290 150634 153996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5290g00018 4 376 Ion Channels AT4G18160 63.185 6.06e-157 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5290g00018 K05389 - gmx:100804249 672.544