Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5290g00015 ATGGTGGAACAAGAGGATGAGCTCTTGTTAATGACCTTTTTGGAACTCAAAGAAGGAAAGACAGATAAGTGGTTTCTAGATTCTAGATGCAGTAACCACATGAGTGGGAATAAGGATTGGTTCTCAAAATTAGATGAGAACTTTCATCATAAAGTAAAGCTTAGCAATGATACCCGCATAGATGTGATGGGAAAATGGAGTGTTTGGATGTTAAGCCCCACATCGCTTCACAAGAAACCTCAATTAAATCGGAAACCTTCTTTACAAATCTCTCTCCCCAAAAAGGCCGAGTGGATCCAATTTGGGAAACCGGAGAACCAGTTGGAGAAGAAGCACTACAGAGGAGTCCGCCAGCGACCTTGGGGAAAGTTCGTCGCCGAGATCCGCGACTCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGGCACCGCCATCGAGGCCGCCAAGGCCAACAACCGTGCTGCCTTCAGGCTCTGTGGCTCAAAGGCCGCCCTCAACTTCCCGCTCGAAGCAGGCGCGGTGGATGCCACAGTCAAGGCCGAAGGCGAAAGGACGCGGCGACGCCAGGAGGAGGAGGTAGAGGAAGTGAAGCTGGTGGTGAAGAAGGAGAAAACAACAGAACAGGAGGTGAACTGTTTTCGGGAGATGTCGTTAACGCCTAAGGTTGAAGATGATCAAAGGTAA 690 0.5 MVEQEDELLLMTFLELKEGKTDKWFLDSRCSNHMSGNKDWFSKLDENFHHKVKLSNDTRIDVMGKWSVWMLSPTSLHKKPQLNRKPSLQISLPKKAEWIQFGKPENQLEKKHYRGVRQRPWGKFVAEIRDSNKRGSRVWLGTFGTAIEAAKANNRAAFRLCGSKAALNFPLEAGAVDATVKAEGERTRRRQEEEVEEVKLVVKKEKTTEQEVNCFREMSLTPKVEDDQR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5290g00015 229 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Vium5290g00015 229 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Vium5290g00015 229 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Vium5290g00015 229 Coils Coil 188 208 - -
Vium5290g00015 229 FunFam Ethylene-responsive transcription factor 2 111 172 - -
Vium5290g00015 229 Gene3D AP2/ERF domain 111 172 IPR036955 GO:0003700|GO:0006355
Vium5290g00015 229 PANTHER DNA-BINDING DOMAIN 91 192 IPR044808 GO:0003700|GO:0009873
Vium5290g00015 229 Pfam AP2 domain 112 162 IPR001471 GO:0003700|GO:0006355
Vium5290g00015 229 SUPERFAMILY DNA-binding domain 112 171 IPR016177 GO:0003677
Vium5290g00015 229 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Vium5290g00015 229 CDD AP2 111 170 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5290g00015 Vium-Chr5290 107591 111475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5290g00015 84 209 AP2-EREBP Transcription Factor Family AT5G47230 61.029 6.45e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium5290g00015 AP2 6.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5290g00015 K09286 - gmx:100816039 177.178