Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5290g00005 ATGCATTCTTTAGCCACGTGTCCTTCCTTCCCACCAAGGACACTTGCGCATGATGTTTCAGAAACATATACATATACCAGTATCATCTATTGCTTACCATGCTTCCGTTTCTTTCTCAGTCTCAAAAACAGCCATTGTTATTCCTCAACTTCTTCTGAATCTGAACTCAGCAAAGACAAAGGCATGCATCAAACGGATATGATGAAGAAGAGGATATCAAGAAGAGGAAGCGATTTGGATTCTTTTGAAAGAAAGGAGCTACCTCACAAGGGTATGGTCACAAGATACCCAAATGAAAAGAATAACCCTTCAACTAGACATTTCATCCATGGATATCACCTAATACAAGGACAGATGAACCATGGAATGGAAGACTATATTTTCGCTCAACGTAGGAATCTCGATGGCTATGACTTAGGATTGTATGCAATATTTGATGGTCACTCCGGTCATGAAGTTGCCAAATACTTACGAAACCATCTATTCGAAAATATACTGAGTGAGCCTGGTTTCTGGGAAAATCCAGGGCAGGCTATTAAGAAAGCATGCAAAGCAACGGATGATGAGATTTTAGAAAACATAGCTGATTCACGTGGAGGATCAACAGCAGTTGCAGCAATACTAGTCAATGGAGTAAAGCTACTGGTAGCCAACGTTGGTGATTCTCGAGCAATATCATGCAACAAAGGTCGAGCAAAGCCACTTACTCTGGATCATGATCCAGAGAAGGAAAAAGCTCTTGTTGAGAGCAGAGGGGGTTTTGTGTCTAAGAGACCCGGGAATGTTCCAAGAGTGGATGGGCAATTAGCAATGACAAGGGCATTTGGAGATGGAAAACTAAAGGAGCACATTACGGCAGAACCAGATGTGACCATTCAGAAGATTGATGAAGACACTGAATTCATTATTTTGGCAAGTGATGGTCTGTGGAAGGTGATGACAAATCAAGAGGCTTGTGACTGTATCAAGAATGTAGATGGTGCGGAGAAAGCAGCTAAGAAATTAGTTAAAGAAGCAATATCTCTAGGAAGCTGTGATGATATTTCAAGCATAGTTATAATGTTCTAG 1068 0.4101 MHSLATCPSFPPRTLAHDVSETYTYTSIIYCLPCFRFFLSLKNSHCYSSTSSESELSKDKGMHQTDMMKKRISRRGSDLDSFERKELPHKGMVTRYPNEKNNPSTRHFIHGYHLIQGQMNHGMEDYIFAQRRNLDGYDLGLYAIFDGHSGHEVAKYLRNHLFENILSEPGFWENPGQAIKKACKATDDEILENIADSRGGSTAVAAILVNGVKLLVANVGDSRAISCNKGRAKPLTLDHDPEKEKALVESRGGFVSKRPGNVPRVDGQLAMTRAFGDGKLKEHITAEPDVTIQKIDEDTEFIILASDGLWKVMTNQEACDCIKNVDGAEKAAKKLVKEAISLGSCDDISSIVIMF 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5290g00005 355 Gene3D - 107 355 IPR036457 -
Vium5290g00005 355 MobiDBLite consensus disorder prediction 56 79 - -
Vium5290g00005 355 Pfam Protein phosphatase 2C 121 348 IPR001932 -
Vium5290g00005 355 SUPERFAMILY PP2C-like 104 355 IPR036457 -
Vium5290g00005 355 CDD PP2Cc 108 353 IPR001932 -
Vium5290g00005 355 MobiDBLite consensus disorder prediction 49 79 - -
Vium5290g00005 355 ProSiteProfiles PPM-type phosphatase domain profile. 109 355 IPR001932 -
Vium5290g00005 355 PANTHER PROTEIN PHOSPHATASE 68 353 IPR015655 GO:0004722|GO:0006470
Vium5290g00005 355 SMART PP2C_4 99 353 IPR001932 -
Vium5290g00005 355 FunFam Probable protein phosphatase 2C 39 101 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5290g00005 Vium-Chr5290 20384 29866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5290g00005 106 355 PP2C-type Phosphatase Gene Family AT3G15260 58.167 8.87e-104 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5290g00005 - - gmx:100814772 476.863