Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5288g00001 ATGCCGATGTTGGTGGAGGACGACGGCGAGGCTGAACCGACCGGCGCGACGGATGACGCGGAGGCTGGTGCATCCGTCAATGACACCAATAATTGGCAACTCCCTTGTGGAGAAAAGATCGGTAAGTGCAAGAACCGCAAGGAATCATCATCATGGCCATTGACAAAATGCTTTCACCACACCAATACAAGAGATACTGCCACGAGAATTGCAGAAGAATGGAACGTTGATTTTTCTGATCTCTTCATCGGGAACAGGTTTTCTCACGGTGCTCACAGTAAAATTTACCATGGCATATACAAGCAGCAACAAGTTGCTATAAAAATTTTCCAGGTAGGAGAATGTGAGGAAGATGGAAACCTTAGATCTCTTTTGGAGACACAGTTTTTGAGAGAAGTCGCACATCTACCTCGTCTGCACCATCAGAATGTGGTGAGTTTCATAGCAGCATGCAGAGATTCTGATTCTTATTACATTCTCACGGAGTATCAACAAAACGGTTCTTTGAGGGCACATTTGAACACGTTGGAGTCGAAGCCAATCTCTCTCAGGAAGGTCATACTTTTTGCTTTGGATATTGCTCGTGGAATGGAATATGTGCATGCACAAGGCATCATTCACAGAGACCTTAAACCTGAGAATGTGCTTGTAGATAATAACTGTAACCTCAGAATTGCTGATTTTGGCGTTGCTTGTGTGGCTTCAAAGTGTGACTCATTGAGGGGAACATATCGTTGGATGGCACCAGAGATGATCAAAGGAAAATGCTATGGGAGGAAGGTTGATGTGTATAGTTTTGGGCTTATTTTGTGGGAGTTGGTGAGTGGAACACTGCCATTTGAGGACATGAATCCAGTTCAGGTTGCTGTTGCAGTAGTTCATAGGAATTCAAGGCCTGTTATTCCCACACATTGCCCACAAAGTTTGAGAGATTTGATCAATCAATGTTGGGCATTGAAACCACAGAAGAGACTTGAATTCTGTCAGATTGTTCGAGTTTTGGAGCAAATGATCAAAGACATTCTTCTCTAA 1032 0.437 MPMLVEDDGEAEPTGATDDAEAGASVNDTNNWQLPCGEKIGKCKNRKESSSWPLTKCFHHTNTRDTATRIAEEWNVDFSDLFIGNRFSHGAHSKIYHGIYKQQQVAIKIFQVGECEEDGNLRSLLETQFLREVAHLPRLHHQNVVSFIAACRDSDSYYILTEYQQNGSLRAHLNTLESKPISLRKVILFALDIARGMEYVHAQGIIHRDLKPENVLVDNNCNLRIADFGVACVASKCDSLRGTYRWMAPEMIKGKCYGRKVDVYSFGLILWELVSGTLPFEDMNPVQVAVAVVHRNSRPVIPTHCPQSLRDLINQCWALKPQKRLEFCQIVRVLEQMIKDILL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5288g00001 343 Pfam Protein tyrosine and serine/threonine kinase 84 334 IPR001245 GO:0004672|GO:0006468
Vium5288g00001 343 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 46 337 - -
Vium5288g00001 343 ProSiteProfiles Protein kinase domain profile. 81 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5288g00001 343 SMART serkin_6 81 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5288g00001 343 CDD STKc_MAP3K-like 89 334 - -
Vium5288g00001 343 MobiDBLite consensus disorder prediction 1 29 - -
Vium5288g00001 343 FunFam Kinase suppressor of Ras 1 70 164 - -
Vium5288g00001 343 Gene3D Phosphorylase Kinase; domain 1 69 165 - -
Vium5288g00001 343 PIRSF ILK 37 342 - -
Vium5288g00001 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vium5288g00001 343 PRINTS Tyrosine kinase catalytic domain signature 242 252 IPR001245 GO:0004672|GO:0006468
Vium5288g00001 343 PRINTS Tyrosine kinase catalytic domain signature 305 327 IPR001245 GO:0004672|GO:0006468
Vium5288g00001 343 PRINTS Tyrosine kinase catalytic domain signature 161 174 IPR001245 GO:0004672|GO:0006468
Vium5288g00001 343 PRINTS Tyrosine kinase catalytic domain signature 199 217 IPR001245 GO:0004672|GO:0006468
Vium5288g00001 343 PRINTS Tyrosine kinase catalytic domain signature 261 283 IPR001245 GO:0004672|GO:0006468
Vium5288g00001 343 Gene3D Transferase(Phosphotransferase) domain 1 166 341 - -
Vium5288g00001 343 SUPERFAMILY Protein kinase-like (PK-like) 50 334 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5288g00001 Vium-Chr5288 848 3267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5288g00001 47 337 MAP Kinase Kinase Kinase AT5G58950 53.061 3.10e-112 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium5288g00001 PK_Tyr_Ser-Thr 3.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5288g00001 - - vum:124840382 709.909