Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5287g00024 ATGGAAGAGCACCAAGAGAAAACCATCGTCACCAATTTCGTGAAATCTAAATTTTTCTTTCCCAAAGTTATTCGCATTTCAGCAACGGATCAGAACGCCACAGACTCCTCTAGCGAAGAAGACGATGAAGAAAGGAACCTTCACAGAGTTAAGAAGGTGGTTAGTGAGATAAGAATTGTTCATGCAAACAAAACCAAAGGACACAACAAAAACATCAACAATAATACTGATTGTTGTTGTTGTTCGGCCAAATACAACAAAACTATGGAACAACACTACCAACAAGAAAAATCAGAGCCCAAGTTTCGCGGCGTGCGGCAACGGCCATGGGGACGGTGGGCCGCCGAGATAAGAGACCCTTTCCAGCGGAAGCGAGTGTGGCTTGGAACCTTCGACACGGCGGAAGAAGCTGCTATGGTTTACGACAGAGCTGCTATAAGCTTCAGAGGTGTTGATGCTGTCACGAATCTCATCAAACCGCCTCTGAAAGAGTGTGAAAGTGTTGTTAAACCGAAGAGTTGTTGTGCATGCGCTTCACCAACTTCTGTTCTGTTGTTTCAGCCTTGGATGGAACCTTTGTCTTTGGAAGAAACCTTCAAAGAAGAAATGTTTGATGGGTTAAACTATGAAGTTGATAGTTTATTGTTTTCTGATCATGCTCTTTATGAGCAACCTCTTCCTACTATGTTGTCTAACGTTGATGTTTCTTTGGATGAGGATCTTGAATCATGTAAATGGGATGTAGATAGTTTTTTCAGTGATGAAACTTTTGAATAA 777 0.4196 MEEHQEKTIVTNFVKSKFFFPKVIRISATDQNATDSSSEEDDEERNLHRVKKVVSEIRIVHANKTKGHNKNINNNTDCCCCSAKYNKTMEQHYQQEKSEPKFRGVRQRPWGRWAAEIRDPFQRKRVWLGTFDTAEEAAMVYDRAAISFRGVDAVTNLIKPPLKECESVVKPKSCCACASPTSVLLFQPWMEPLSLEETFKEEMFDGLNYEVDSLLFSDHALYEQPLPTMLSNVDVSLDEDLESCKWDVDSFFSDETFE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5287g00024 258 PIRSF PTI6 3 256 IPR017392 GO:0003700
Vium5287g00024 258 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Vium5287g00024 258 Gene3D AP2/ERF domain 101 158 IPR036955 GO:0003700|GO:0006355
Vium5287g00024 258 Pfam AP2 domain 100 150 IPR001471 GO:0003700|GO:0006355
Vium5287g00024 258 CDD AP2 100 156 IPR001471 GO:0003700|GO:0006355
Vium5287g00024 258 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Vium5287g00024 258 FunFam Ethylene-responsive transcription factor 2 101 159 - -
Vium5287g00024 258 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Vium5287g00024 258 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vium5287g00024 258 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 187 - -
Vium5287g00024 258 SUPERFAMILY DNA-binding domain 101 157 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5287g00024 Vium-Chr5287 195947 196783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5287g00024 22 205 AP2-EREBP Transcription Factor Family AT4G27950 40.670 1.92e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium5287g00024 AP2 8.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5287g00024 - - pvu:PHAVU_010G035200g 390.578