Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5287g00022 ATGGTGCTGCATAGCCGGATTTTCAGTTACCATGTTGTTAGTTTCTTGTTGCTGATTAGTTGTGGCATGAACTATGGAACCGATACTGATATTTTCTGCCTACAAAGTATAAAAGATGCCCTTGAGGATCCCAATAACTATTTGAAGTTTTCTTGGGATTTCAACAACAAAACTGAAGGGTTCATATGTAGGTTTATTGGGGTTGAGTGTTGGCACCCTGATGAGAACAGGGTCTTGAATCTCAAACTGTCAAATATGGGACTCAAGGGCCAGTTTCCTCGTGCCATTCAAAATTGCTCTAGCTTAACTGGGTTAGACCTTTCAATTAACAAACTCTCTGGAACCATTCCGGGAGATATATCTACTCTTGTACCATTTGTGACCTCTTTTGACCTTTCTTCAAATGAATTTTCTGGGGCGATTCCGGTGACTCTTTCAAATTGCACCTTTCTCAATAGCCTTAGACTTGATCAGAACAGACTCACTGGTCAAATTCCTCTACAATTTGGTATTCTCCCACGGCTCAAGACCTTTTCTGTGTCTAACAATCTTTTGACGGGGCAAGTTCCAAGCTTTAACTCTTCAGTTTCAGTGAATTATGCAAATAATCAAGGCCTGTGTGGAGGTAATGGATTGGGGTCTTGCCAAGCCAAGAATTCTAAGAGTAACATGGCTGTTATTGCTGGAGCTGCTGCAGGTGGGGTGACTCTTGCAGCATTAGGATTGGCTGTTGCAATGTTTTTCTTCGTGCGACGTGTTTCTGTCAAGAAGAAGGAAGAGGACCCTGAAGGAAACAAATGGGCAAGAAGTCTAAAAGGAACTAAACAAATTAAGGTTTCTATGTTTGAGAAATCAATCTCAAAAATGAAGTTGATCGATCTCATGAAGGCTACTAACAACTTCAGTAATAGCAATATCATTGGGTCAGGAAGAACAGGAACTGTTTACAAAGCTGTGCTTGGTGATGGAACAACATTTATGGTAAAGAGATTACAGGAATCTCAGTACACTGAAAAGGAATTCATGTCTGAGATGGGTACACTAGGGACTGTCAAACATCGCAATCTTGTTCCTCTTTTAGGCTTTTGCATGGCCAAAAAGGAGAGGCTTTTGGTCTATAAAAACATGCCAAATGGCAATCTGCATGACCAACTCCATCCTGCAGATGGTGTGAGCACCCTTGACTGGACTACAAGACTCAAAATTGCAATTGGAGCAGCCAAAGGGTTTGCATGGCTTCATCATAGCTGCAACCCCCGAATCATCCACCGAAACATAAGCTCAAAGTGCATCTTGTTGGATGCAGAATTTGAGCCAAAAATTTCTGATTTCGGCCTTGCCAGACTGATGAACCCAATTGATACTCATTTGAGTACTTTTGTAAATGGGGAGTTTGGTGATTTGGGTTATGTTGCTCCTGAGTACACAAGAACTTTGGTTGCTACACCCAAGGGGGATGTTTATAGCTTTGGGACTGTTCTTCTTGAGTTGGTGACTGGTGAAAGACCCACCAATGTGGCTAAAGCTCCAGAAACTTTTAAAGGAAATCTGGTAGAATGGATCACAGAGCTAACAAACAATGGAAAACTCCATAATGCCATTGATGAATCATTAGTCAGCAAGGAAGTTGACAGTGAGCTTTTCCAATTTCTGAAGATTGCATGCAACTGTGTTCTGCCAACTCCAAAGGAGAGGCCAACCATGTTTGAAGTGTATCAGTTTTTAAGAGCCATTGGTGCTAGATACAATTTCACAACTGATGATGAGATATTGGTACCTACTGATAATGGTGATGCTGATAACATGGAGGAACTCATTGTAGCTCGGGAATGA 1833 0.4152 MVLHSRIFSYHVVSFLLLISCGMNYGTDTDIFCLQSIKDALEDPNNYLKFSWDFNNKTEGFICRFIGVECWHPDENRVLNLKLSNMGLKGQFPRAIQNCSSLTGLDLSINKLSGTIPGDISTLVPFVTSFDLSSNEFSGAIPVTLSNCTFLNSLRLDQNRLTGQIPLQFGILPRLKTFSVSNNLLTGQVPSFNSSVSVNYANNQGLCGGNGLGSCQAKNSKSNMAVIAGAAAGGVTLAALGLAVAMFFFVRRVSVKKKEEDPEGNKWARSLKGTKQIKVSMFEKSISKMKLIDLMKATNNFSNSNIIGSGRTGTVYKAVLGDGTTFMVKRLQESQYTEKEFMSEMGTLGTVKHRNLVPLLGFCMAKKERLLVYKNMPNGNLHDQLHPADGVSTLDWTTRLKIAIGAAKGFAWLHHSCNPRIIHRNISSKCILLDAEFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWITELTNNGKLHNAIDESLVSKEVDSELFQFLKIACNCVLPTPKERPTMFEVYQFLRAIGARYNFTTDDEILVPTDNGDADNMEELIVARE 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5287g00022 610 Gene3D Phosphorylase Kinase; domain 1 262 374 - -
Vium5287g00022 610 FunFam Nuclear pore complex protein NUP107 27 191 - -
Vium5287g00022 610 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 46 192 - -
Vium5287g00022 610 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vium5287g00022 610 CDD STKc_IRAK 307 575 - -
Vium5287g00022 610 SUPERFAMILY L domain-like 29 196 - -
Vium5287g00022 610 ProSiteProfiles Protein kinase domain profile. 301 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5287g00022 610 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 262 375 - -
Vium5287g00022 610 Gene3D Ribonuclease Inhibitor 28 217 IPR032675 -
Vium5287g00022 610 Pfam Leucine rich repeat N-terminal domain 28 71 IPR013210 -
Vium5287g00022 610 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 376 596 - -
Vium5287g00022 610 SUPERFAMILY Protein kinase-like (PK-like) 278 575 IPR011009 -
Vium5287g00022 610 Gene3D Transferase(Phosphotransferase) domain 1 376 592 - -
Vium5287g00022 610 Pfam Protein tyrosine and serine/threonine kinase 304 575 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5287g00022 Vium-Chr5287 148194 151495 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5287g00022 13 589 Receptor kinase-like Gene Family AT3G28450 46.141 8.09e-179 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vium5287g00022 PK_Tyr_Ser-Thr 8.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5287g00022 - - gmx:100305365 970.689