Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium5281g00001 | ATGGGACGATCACCATGCTGCGACAAGGTAGGTTTAAAGAAAGGACCATGGACTCCGGAAGAAGATCAGAAGCTCTTAGCTTACATTGAAGAACATGGTCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGGCTTCAGAGGTGTGGCAAGAGCTGTAGACTGAGATGGACCAATTATCTCAGACCTGATATTAAGAGAGGAAAGTTCAGTCTGCAAGAGGAACAAACCATCATTCAACTCCATGCCCTCTTAGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAACGAGATCAAGAACTACTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGACCCTGTCACACACAAACCCAAAAACGATGCACTTCTCTCCAGTGATGGTCAATCCAAAACCGCTGCAAACCTCAGCCACATGGCCCAGTGGGAAAGTGCTCGACTTGAAGCCGAAGCAAGACTAGTGAGAGAGTCAAAGCTACGTTCGCATTCACTTCAGCAACAAATTGGAAGTTCTTCTACATTTGCATCATCATCTTCTGCATCCACTTCAGCTTCAGTGCTCAACAATAATAAACCAGAAGCACCACCTCCGCCACCGCCCCCGCTGTCTCGGTCCTCCCTTGACGTCCTCAAGGCTTGGAACAACGGAGGTTGGTTGAAGTCCAGTGATGGGAGTGGCGCCATTGCAAGCACGGTTGGGGTAAGTGGGGACCTTGAGTCTCCTACTTCTACGTTATCTTTCTCTGAGAATGCACCACCGATTATGAATGCGATTGGAGGAGAAAATAACAACAACAATGATAACGCAATGCCTATGATCGAGTTTGTGGGAAGTTCGGGTAATTCTTCTTCTCTTGTGAAAGAAGAGGGTGAGCAGGAATGGAAAGGTTACGATAGTTCTATCAACACTTTCAGTTCTGGTTTGCATGAGTTCACAATGGCCATGGAGGGCACGTGGGTCCACGAGACTCTCAGAACCAATGGCTCACATGATGACATTGTTGAAGAAGGCTTCACCAATCTTCTCCTTAAGACAAACTCGGAAGATCCAAGTTTGTCGTCGGAAGGTGGAGGAGAGTCTAACAATGGTGACGGTGGTAGCGCCGGTCACAGTGATTTTTACGAAGATAACAACAACTATTGGAACAGCATCCTTAATTTAGTGAATTCATCTCCTTCTTATTCTCCTATGTTCTGA | 1227 | 0.4662 | MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQQQIGSSSTFASSSSASTSASVLNNNKPEAPPPPPPPLSRSSLDVLKAWNNGGWLKSSDGSGAIASTVGVSGDLESPTSTLSFSENAPPIMNAIGGENNNNNDNAMPMIEFVGSSGNSSSLVKEEGEQEWKGYDSSINTFSSGLHEFTMAMEGTWVHETLRTNGSHDDIVEEGFTNLLLKTNSEDPSLSSEGGGESNNGDGGSAGHSDFYEDNNNYWNSILNLVNSSPSYSPMF | 408 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium5281g00001 | 408 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 1 | 240 | - | - | |
Vium5281g00001 | 408 | CDD | SANT | 69 | 112 | IPR001005 | - | |
Vium5281g00001 | 408 | MobiDBLite | consensus disorder prediction | 132 | 147 | - | - | |
Vium5281g00001 | 408 | ProSiteProfiles | Myb-like domain profile. | 62 | 112 | IPR001005 | - | |
Vium5281g00001 | 408 | CDD | SANT | 16 | 61 | IPR001005 | - | |
Vium5281g00001 | 408 | Gene3D | - | 13 | 66 | - | - | |
Vium5281g00001 | 408 | Gene3D | - | 69 | 116 | - | - | |
Vium5281g00001 | 408 | Pfam | Myb-like DNA-binding domain | 14 | 61 | IPR001005 | - | |
Vium5281g00001 | 408 | Pfam | Myb-like DNA-binding domain | 67 | 112 | IPR001005 | - | |
Vium5281g00001 | 408 | MobiDBLite | consensus disorder prediction | 172 | 200 | - | - | |
Vium5281g00001 | 408 | FunFam | MYB transcription factor | 69 | 116 | - | - | |
Vium5281g00001 | 408 | SMART | sant | 66 | 114 | IPR001005 | - | |
Vium5281g00001 | 408 | SMART | sant | 13 | 63 | IPR001005 | - | |
Vium5281g00001 | 408 | MobiDBLite | consensus disorder prediction | 172 | 217 | - | - | |
Vium5281g00001 | 408 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 62 | 116 | IPR017930 | - | |
Vium5281g00001 | 408 | MobiDBLite | consensus disorder prediction | 121 | 147 | - | - | |
Vium5281g00001 | 408 | MobiDBLite | consensus disorder prediction | 356 | 381 | - | - | |
Vium5281g00001 | 408 | SUPERFAMILY | Homeodomain-like | 11 | 108 | IPR009057 | - | |
Vium5281g00001 | 408 | ProSiteProfiles | Myb-like domain profile. | 9 | 61 | IPR001005 | - | |
Vium5281g00001 | 408 | FunFam | MYB-related transcription factor | 13 | 66 | - | - | |
Vium5281g00001 | 408 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 61 | IPR017930 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium5281g00001 | Vium-Chr5281 | 28515 | 31255 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium5281g00001 | 1 | 408 | MYB Transcription Factor Family | AT3G01140 | 54.567 | 1.13e-124 | 362 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Vium5281g00001 | Myb_DNA-binding | 1.5e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium5281g00001 | K09422 | - | gmx:100787446 | 690.263 |