Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5262g00005 ATGGCATCCCTTTCGATCGTCCTATGTTCTTGTCTCATCATTTTCATGGCTGCCACGAACACTTCTGTTCAAGCTTCCATTCATTTCCAAGTTGGTGGCAGCCTTGGTTGGCACGAACCTGACCCCAACAATACTGAATTTTATAGCCAATGGGCTCAAAGGAACAGGTTTCAAGTCGGTGATGCTCTTGTTTTTGAGTACCAGAATGACTCAGTTCTCAGGGTGGAGAAATTGGATTACATGAATTGTGATGCAAGTAACCCCATCATAGCTTTTGACAATGGTAAGAGCACTTTTATTCTTGACAGGCCTGGGGACTTCTACTTCATCAGTGGAACCGGTGAACACTGCAAGAATGGGCAAAGATTAGTGGTGGATGTGATTCATGAACATCGTTTTACATCTCCGCCAACCATTTCTCTTCCACCACAAGGCTTTCCACCAATGGCTTCTCCACCTGATCAAAGCTTTGAGGATTCAACATCTGCCTCAGTGATGATTACTGCAACTTCTGTGTCTGTTTTGGTGATCACGTTTGTTATTGTGGTGCTGTTAGCACCTTGA 564 0.4433 MASLSIVLCSCLIIFMAATNTSVQASIHFQVGGSLGWHEPDPNNTEFYSQWAQRNRFQVGDALVFEYQNDSVLRVEKLDYMNCDASNPIIAFDNGKSTFILDRPGDFYFISGTGEHCKNGQRLVVDVIHEHRFTSPPTISLPPQGFPPMASPPDQSFEDSTSASVMITATSVSVLVITFVIVVLLAP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5262g00005 187 ProSiteProfiles Phytocyanin domain profile. 27 129 IPR003245 GO:0009055
Vium5262g00005 187 FunFam Early nodulin-like protein 1 26 132 - -
Vium5262g00005 187 Gene3D - 27 137 IPR008972 -
Vium5262g00005 187 SUPERFAMILY Cupredoxins 27 128 IPR008972 -
Vium5262g00005 187 CDD OsENODL1_like 29 128 IPR041846 -
Vium5262g00005 187 PANTHER BLUE COPPER PROTEIN 27 158 IPR039391 GO:0009055
Vium5262g00005 187 Pfam Plastocyanin-like domain 44 121 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5262g00005 Vium-Chr5262 45422 46204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5262g00005 2 140 Phytocyanin Superfamily AT1G79800 44.444 8.66e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5262g00005 - - gmx:100783893 246.514