Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5262g00003 ATGATCGATACGCCGTGTCACAAAACTCCTGGCAGTAGCACCAACAACCCCTCCACTTCAAAACCCCATAAAACAGAGACTCCAAAACAGAGCAAGACCCAAAAACAGAGCAAGCTCAAGAGAAACAGAGACCCCACCAAGCATCCCGTCTACCACGGCGTTCGAATGCGCAATTGGGGAAAATGGGTATCCGAAATTCGCGAGCCACGCAAGAAATCACGCATATGGCTCGGAACTTTTGACACGCCTGAAATGGCGGCACGCGCGCACGATGTTGCTGCTCTGAGCATCAAGGGCCACACGGCCGTTCTCAATTTCCCTAACCTAGTAAATATGCTTCCCAGACCCGTGACGTGTGCCCCACGTGACATCCAAGTGGCCGCGGCGGAAGCCGCCGCGATGGTGGAGTTCGACCGCGAGTGTTCTGATGAGGCGGAGTCGTCTGAGCTAAGCGAGATTGTGGAACTGCCGAACATAGAAGAGAGCTTGGAATCGGTGGAGTCGAGAAGTGAGTTCGCGTTTATTGACTCAGTGGATAGTTGGTTGTACCCTCCAATGGCAGTGGGAAGCATTTGTGAGATGATGGTTGGTGAAGATGAGTGTGGATTCTTCCACTTTCAGACTGATCATCAAAAAACATGTTCCGTTCAGTTTCAACTCTTTTAA 666 0.512 MIDTPCHKTPGSSTNNPSTSKPHKTETPKQSKTQKQSKLKRNRDPTKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFDTPEMAARAHDVAALSIKGHTAVLNFPNLVNMLPRPVTCAPRDIQVAAAEAAAMVEFDRECSDEAESSELSEIVELPNIEESLESVESRSEFAFIDSVDSWLYPPMAVGSICEMMVGEDECGFFHFQTDHQKTCSVQFQLF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5262g00003 221 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Vium5262g00003 221 MobiDBLite consensus disorder prediction 25 51 - -
Vium5262g00003 221 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Vium5262g00003 221 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Vium5262g00003 221 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Vium5262g00003 221 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vium5262g00003 221 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Vium5262g00003 221 MobiDBLite consensus disorder prediction 7 24 - -
Vium5262g00003 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 163 - -
Vium5262g00003 221 Pfam AP2 domain 49 100 IPR001471 GO:0003700|GO:0006355
Vium5262g00003 221 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Vium5262g00003 221 MobiDBLite consensus disorder prediction 1 51 - -
Vium5262g00003 221 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5262g00003 Vium-Chr5262 24996 25931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5262g00003 29 185 AP2-EREBP Transcription Factor Family AT5G11590 56.044 6.21e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium5262g00003 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5262g00003 K09286 - gmx:100787471 328.946