Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5254g00001 CCCAGTACCAAAGTCACCAAACTGCCACCGTTTTCTGATTCCACCCTTGCTTCTGCACCTCCCAGATTTCCCAGGATGGAGAGTTGTTTCAGCTTTGCACAGTGGCAAGAGCTTGAGTTGCAGACTCTGATATTTAGGTACATGCTGGCCGGTACTCCTGTTCCTCCTCAGCTGCTTCAACCAATCAAGAAAAGCTTCTTTCATTCCCCTCCCCCTTTCCTTCAACTTTATCACCCTCCTTTGTTGGAATCAGGGTACTATTGGGGAAGAGAAGCACTGGATCCGGAGCCAGGTCGGTGCCGGAGAACGGACGGGAAGAAGTGGCGGTGCTCGAGGGAGGCGGTGGAGGGTCAGAAGTACTGCGAGCGGCACATGCATCGTGGCCGAAACCGTTCAAGAAAGCCTGTGGAACAACCTCATGCATCTTCTTCTTCTTTATCCTCTGCTTCCTTCAAACATCATCTCCTTCACCACAATCAAATTTCCACTGGGGCCAAGAGTAACAGCAAGAGCTTGTCTGAAAACCATGATCATGTAGATGGGAATGGCAGATCTGATGGCCATGTCCTGAGGCATTTCTTCGATGATTGGCCAAGGACACTGCAAGAACAAGACCATAGTAAAAGCAATGGTAGCCAGAACAACAACACTGGAACATATCTTTCCATGTCAACACAAGGAATCACTTCCTCGGATGTGTCACTGAGACTGTCCACTGGTCATGCAGAGAATACAAGCCACGTGGCTTCAGTGGGAGGACCACTCGCAGAGGCACTGAGATCATCCACCTCCACTTCTTCACCAACCAGTGTTCTGCTACAGTTGCCAACTAGTTCTGCTTGTAACACCAGCTTCATTAGCACCTAA 867 0.4971 PSTKVTKLPPFSDSTLASAPPRFPRMESCFSFAQWQELELQTLIFRYMLAGTPVPPQLLQPIKKSFFHSPPPFLQLYHPPLLESGYYWGREALDPEPGRCRRTDGKKWRCSREAVEGQKYCERHMHRGRNRSRKPVEQPHASSSSLSSASFKHHLLHHNQISTGAKSNSKSLSENHDHVDGNGRSDGHVLRHFFDDWPRTLQEQDHSKSNGSQNNNTGTYLSMSTQGITSSDVSLRLSTGHAENTSHVASVGGPLAEALRSSTSTSSPTSVLLQLPTSSACNTSFIST 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5254g00001 288 MobiDBLite consensus disorder prediction 121 148 - -
Vium5254g00001 288 ProSiteProfiles WRC domain profile. 94 138 IPR014977 -
Vium5254g00001 288 Pfam QLQ 30 62 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium5254g00001 288 Pfam WRC 95 137 IPR014977 -
Vium5254g00001 288 MobiDBLite consensus disorder prediction 163 187 - -
Vium5254g00001 288 ProSiteProfiles QLQ domain profile. 29 64 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium5254g00001 288 PANTHER GROWTH-REGULATING FACTOR 5 27 232 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vium5254g00001 288 MobiDBLite consensus disorder prediction 171 187 - -
Vium5254g00001 288 SMART QLQ_2 28 64 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5254g00001 Vium-Chr5254 290 2724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5254g00001 22 279 GRF Transcription Factor Family AT3G52910 45.192 1.88e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vium5254g00001 WRC 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5254g00001 - - vum:124840321 576.244