Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5253g00023 ATGAGCTGCAATGGTTGTCGTGTTCTCAGAAAGGGTTGCAGTGAGAACTGCATGCTACGACATTGCCTACAATTGATAGAGAACCCACAAGCCCAAGCTCACGCCACCCTCTTTGTGGCCAAGTTCTTTGGCCGTGCTGCTCTCATGTCGTTCCTTTCCGCCGTACCTGCCAACCAAAGATCCGCTTTGTTTCAGTCACTGCTTTATGAAGCAGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGTTGTTGTGGAGTGGGAACTGGCAGCTGTGCCAAATGGGTGTGGAGAAAGTGCTCCGAGGTGGAACATTGTGTCACCAGGCAAAGAAGCAACGTGTGGGGACACCCTCCCAGGAATCTGAGACCTCCTATATGGGACGTAAACCACAGGATTCTGCCCCTCAAAGTCAAAGGAACCTCCTTACACTATTCTTCTGA 447 0.5101 MSCNGCRVLRKGCSENCMLRHCLQLIENPQAQAHATLFVAKFFGRAALMSFLSAVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWSGNWQLCQMGVEKVLRGGTLCHQAKKQRVGTPSQESETSYMGRKPQDSAPQSQRNLLTLFF 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5253g00023 148 MobiDBLite consensus disorder prediction 113 138 - -
Vium5253g00023 148 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vium5253g00023 148 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 123 - -
Vium5253g00023 148 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5253g00023 Vium-Chr5253 135139 136441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5253g00023 1 107 AS2 family AT3G49940 78.505 6.19e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium5253g00023 LOB 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5253g00023 - - gmx:100816269 246.899