LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium5253g00021	ATGGCATCTGCGGTTCCCGCCGCGACGGGGCGAGAGTTGTCGAATCCTCCATCGGACGGCATAACGAATCTCCGATTCTCAAATCACAGCGACCATCTCTTGGTCTCCTCATGGGACAAGAGTGTGCGGCTGTATGATGCGAGCGCCAATGTGTTGAGAGGAGAGTTCATGCACGCTGGCCCTGTTCTCGATTGCTGCTTCCACGACGATTCCTCTGGTTTCAGTGCCGCAGCCGACAACACTGTTAGACGGCTTGTCTTCAGCTCCAATAAAGAGGATATTCTGGGGAGGCATGATGCACCTGTTCGTTGTGTTGAGTACTCGTATGCTGCAGGCCAACTGATCACTGGTAGTTGGGACAAAACGCTGAAATGTTGGGACCCTAGAGGCGCCAGTGGACAGGAGCGCACACTAGTTGGGACATATCCACAACCTGAGCGTGTGTACTCTCTCTCACTGGTTGGACATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTCAATATCTATGATTTGAGGAACATGTCTCAACCTGAGCAAAAAAGAGAATCTTCATTGAAATATCAAACCAGATGTGTTCGCTGTTACCCTAATGGAACAGGATATGCACTTAGTTCTGTTGAGGGCCGGGTTGCAATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCGAAAAAATATGCTTTCAAGTGTCACAGAAAATCGGAAGCTGGAAGGGACATAGTCTATCCTGTAAATGCAATTGCATTCCACCCCATATATGGCACATTTGCCACGGGAGGTTGTGATGGGTATGTTAACGTATGGGACGGAAACAATAAAAAGAGGCTATACCAGTACTCTAAATATCCAACTAGCGTTGCCGCACTCTCGTTTAGCAGAGATGGACGCCTGTTGGCTGTTGCATCAAGTTACACTTTCGAAGAAGGACCTAAAAGCAACGAATCGGATGCTATTTTCGTTCGTAGTGTAAACGAGATTGAGGTGAAGCCGAAGCCCAAAGTCTATCCAAATCCTCCAGCGTGA	1026	0.4854	MASAVPAATGRELSNPPSDGITNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSAAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEEGPKSNESDAIFVRSVNEIEVKPKPKVYPNPPA	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium5253g00021	341	Pfam	WD domain, G-beta repeat	229	270	IPR001680	GO:0005515
	Vium5253g00021	341	Pfam	WD domain, G-beta repeat	19	46	IPR001680	GO:0005515
	Vium5253g00021	341	Pfam	WD domain, G-beta repeat	95	127	IPR001680	GO:0005515
	Vium5253g00021	341	Gene3D	-	7	335	IPR015943	GO:0005515
	Vium5253g00021	341	ProSiteProfiles	Trp-Asp (WD) repeats profile.	245	279	IPR001680	GO:0005515
	Vium5253g00021	341	ProSiteProfiles	Trp-Asp (WD) repeats profile.	95	127	IPR001680	GO:0005515
	Vium5253g00021	341	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vium5253g00021	341	PANTHER	MRNA EXPORT FACTOR AND BUB3	11	327	-	-
	Vium5253g00021	341	SMART	WD40_4	49	86	IPR001680	GO:0005515
	Vium5253g00021	341	SMART	WD40_4	6	46	IPR001680	GO:0005515
	Vium5253g00021	341	SMART	WD40_4	135	171	IPR001680	GO:0005515
	Vium5253g00021	341	SMART	WD40_4	88	127	IPR001680	GO:0005515
	Vium5253g00021	341	SMART	WD40_4	222	270	IPR001680	GO:0005515
	Vium5253g00021	341	SUPERFAMILY	WD40 repeat-like	17	304	IPR036322	GO:0005515
	Vium5253g00021	341	PRINTS	G protein beta WD-40 repeat signature	257	271	IPR020472	-
	Vium5253g00021	341	PRINTS	G protein beta WD-40 repeat signature	33	47	IPR020472	-
	Vium5253g00021	341	PRINTS	G protein beta WD-40 repeat signature	114	128	IPR020472	-
	Vium5253g00021	341	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	95	127	-	-
	Vium5253g00021	341	FunFam	Mitotic checkpoint protein bub3, putative	6	334	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium5253g00021	Vium-Chr5253	124225	127736	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium5253g00021	75	303	U-box Gene Family	AT2G33340	24.464	6.72e-07	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium5253g00021	K02180		-	gmx:100808389	659.062