Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5253g00012 ATGGGTGATGCACTAAATGAAGTGCAGCACAGGGGTGGTGTACCCGCTTCTTCTCCCAAGAGGGACATTGCATTGTTTGAAGGAGACAAGGATTTTGAGCCGCACAATGGCATTGAATTTGAATCCCATGAAGCAGCATATTTATTTTATCAGGAATATGCCAAATCTATGGGATTCACTACTTCAATAAAAAACAGCAGACGCTCAAAGAAAACAAAAGAATTTATTGATGCCAAATTTGCATGCTCTAGGTATGGAGTTACGCCTGAGTCTGACAGTGGCAGCAGTCGAAGACCAAGTGTAAAGAAAACAGATTGCAAAGCTTGCATGCACGTGAAGAGAAAGCCAGATGGAAAATGGATCATTCACGAATTTATAAAGGAACATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAATTAGCTGAAAAGAATAATATTGATATCTTGAATGCTGTTAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCAAGGCAATCTGGAGGCTGTCAAAACATCGGGTCTTTTGTGAGTGATATAAACTATCAGTTTGACAGAGGCCAGTATCTGGCTTTGGAAGAGGGAGATGCCCAAATTATGCTTGAGTATTTTAAGCATGTGCAAAAGGAGAGTCCCAACTTCTTCTATTATATAGATTTAAATGAAGAACAGCGGTTAAGAAATCTATTTTGGATTGATGCAAAAAGTATCAACGATTATCTTAGCTTTAATGATGTAGTTTCATTTGATACCACTTACATAAAAAGCAATGACAAGTTGCCGTTTGCACCTTTTGTTGGAGTGAACCATCACTCTCAGCCTATTTTGCTTGGATGTGCATTGGTTGCTGATGAGAGTAAACCAACATTTGTTTGGTTAATGAAGACATGGCTTAGAGCTATGGGTGGGCAAGCTCCCAAGGTTATAATCACTGATCAAGACAAAGCCTTGAAGGCAGCAATTGAAGAAGTCTTTCCGAATGTACGTCATTGTTTTTCTCTTTGCCACATACTAGAGAGGATACCAGAAAATCTCTCTTTTGTGATCAAACAACACAACAACTTCTTACAAAAATTTAATAAGTGCATTTTTAAATCGACAGAGGACCAGTTTGACATGAGATGGTGGAAAATGGTCAGCATATATGAACTCCAAGATGATGTTTGGTTTCAGTCATTGTATGAGGACCGGAAAAAGTGGGTGCCGACTTACATGGGGGATACCTTTTTAGCTGGAATGTCTACACCTCAGCGCTCTGAAAGTACGAGCTCTTTCTTTGACAAATATATTCATAAGAAAATTACCCTCAAGGAGTTTGTAAAACAGTATGGGATAATTCTGCAAAATAGGTATGATGAAGAAGCCATTGCGGATTTTGAATCATTGCACAAGCAGCCAGCACTTAAATCTCCTTCACCTTGGGAAAAGCAAATGTCAACAATTTATGCACATGCAATATTTAAGAAATTTCAAGTTGAAGTTCTGGGTGTAGCTGGTTGTCAATCTAGGATAGAGGTTGGAGATGGAACTCTTGCAAAGTTCATAGTTCAAGATTATGAGAAGGATGAAGAGTTTTTGGTAACTTGGAATGAAATGAGCTCAGAGGTCTCCTGCTTTTGTCGATTGTTTGAATATAAAGGTTTCCTCTGCAGGCATGCTTTGAGTGTTCTCCAACGTTGTGGTTGTTCAAGTGTTCCATCTCATTATATCTTGAAGAGGTGGACGAAAGATGCCAAAATTAAGGAATCAATGGCTGATAGGACAAGAAGGATACAAACTAGGGTGCAGCGTTATAATGACTTGTGTAAACGAGCCATCGATTTAAGTGAAGAAGGATCATTATCTGAAGAGAATTACAATGTTGTTTTTCGTGCACTTGTTGACGCCTTGAAGAACTGTGTATTGGTGAATAATTGTAACAACAACGGTGCAGAAACTAGCAACAATGCCTATGGTCTTCGTGAAGCAGAAGAAAATCAGGGTCCTCTTGCTTTGAAACCAAATAAAAAGAGGAACGCAGCTAGGAAAAGAAAGGCACAATTAGAGCAGGATGTTATACTTGTTAATGCTCAAGATAGCCTGCAGCAAATGGATAATCTCAGCTCGGATGCAATGACCCTTAATGGATATTATGGTACCCAGCAGAATGTGCAAGGACTGCAGGTACAATTGAACTTAATGGAGCCGCCTCATGATGGCTACTATGTTAATCAACAGGGCATGCAAGGCCTGGGTCCTTTGAATTCCATGGCTCCAAGCCATGATGGGTTTTTTGGAACACAGCAAGGAATTCATGGGCTGGGAGGGCAATTGGAATTTCGTCCATCAACTACTTTTGGATATAGCCTTCAGGATGAACCTGATCCCCAGTTTCATGGCAACAGTTCAAGAAATACTTAG 2427 0.396 MGDALNEVQHRGGVPASSPKRDIALFEGDKDFEPHNGIEFESHEAAYLFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILNAVSERTRKMYVEMSRQSGGCQNIGSFVSDINYQFDRGQYLALEEGDAQIMLEYFKHVQKESPNFFYYIDLNEEQRLRNLFWIDAKSINDYLSFNDVVSFDTTYIKSNDKLPFAPFVGVNHHSQPILLGCALVADESKPTFVWLMKTWLRAMGGQAPKVIITDQDKALKAAIEEVFPNVRHCFSLCHILERIPENLSFVIKQHNNFLQKFNKCIFKSTEDQFDMRWWKMVSIYELQDDVWFQSLYEDRKKWVPTYMGDTFLAGMSTPQRSESTSSFFDKYIHKKITLKEFVKQYGIILQNRYDEEAIADFESLHKQPALKSPSPWEKQMSTIYAHAIFKKFQVEVLGVAGCQSRIEVGDGTLAKFIVQDYEKDEEFLVTWNEMSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYILKRWTKDAKIKESMADRTRRIQTRVQRYNDLCKRAIDLSEEGSLSEENYNVVFRALVDALKNCVLVNNCNNNGAETSNNAYGLREAEENQGPLALKPNKKRNAARKRKAQLEQDVILVNAQDSLQQMDNLSSDAMTLNGYYGTQQNVQGLQVQLNLMEPPHDGYYVNQQGMQGLGPLNSMAPSHDGFFGTQQGIHGLGGQLEFRPSTTFGYSLQDEPDPQFHGNSSRNT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5253g00012 808 SMART 26again6 545 572 IPR006564 GO:0008270
Vium5253g00012 808 Pfam MULE transposase domain 255 348 IPR018289 -
Vium5253g00012 808 Coils Coil 680 700 - -
Vium5253g00012 808 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 643 IPR031052 GO:0006355
Vium5253g00012 808 MobiDBLite consensus disorder prediction 1 20 - -
Vium5253g00012 808 MobiDBLite consensus disorder prediction 786 808 - -
Vium5253g00012 808 Pfam SWIM zinc finger 544 569 IPR007527 GO:0008270
Vium5253g00012 808 ProSiteProfiles Zinc finger SWIM-type profile. 534 570 IPR007527 GO:0008270
Vium5253g00012 808 Pfam FAR1 DNA-binding domain 49 135 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5253g00012 Vium-Chr5253 81343 86408 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium5253g00012 MULE 4.7e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5253g00012 - - gmx:100805377 1521.52