Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5253g00008 ATGCCCAACGGCAAGGCCAAGATGTGGGAGGAAGACCGCCACCAGCAGGGAGGAGGGATGGATGAGTTGCTCGCGGCATTGGGCTACAAGGTTCGTGCTTCCGACATGGCAGACGTCGCACAAAAGCTTGAGCAGTTGGAGATGGTCATGAGGAGTGCCCAGGAAGATGGAATTTCCCACCTTGCTTCCGACACCGTCGTATCCATCTGGACCTGTTCATTGGTTCCCTGGAAGAAGCTCTTAGGTAACCAGAGGGAGTTATCAGCATTCATGCCATTTCTGACTTTCAGTTGGGGATACCTGCATTTTTCTTCATTTGCTCCCTTTTTGTCTTTGCTGCCTTTTTTGTATCTCCTCTCCTCTTTCAGGTTTCTATATTGCTTCCTTTCTTGGGTTCTTGTGCTTTCATTATTCACTAGCAACGCATTTCAGGATTTGGACGATGTGAGATCAAAATCAAGAATACTCCAAGAATTTGAGAAGAAAGTATATGAACCTGTTGAGCATGGTGAATCCGGGGAATCCTTTTTTGATTCAATCCCATTTCAGATTTTAAGTTGGAGACCGCGGGAGGTTTATTTTCCAAACTTTACTAGTGTGGAAGCATGTCAGCAAATAATTGAAATGGCAAAAGCAAAACTTGAACCATCAAAACTGGCTTTGCGGAAAGGAGAAACTGCTGAGAGCACAAAAGACACTAGAACAAGTTCAGGCACATTTATCAGTGCATCAGGAGACAAATCTGGCATTTTAGACATGTTAGAGAGGAAAATTGCTAGAGTTACAATGATTCCAAGGAGCCATGGGGAAAAATTCAATATATTGAAGTATGAGGTTGGCCAGAAATATGATTCTCATTACGATGCGTTCAACCCAGATGAATACGGCATTGTTAAGAGCCAAAGGATGGCTTCCTTTCTGTTATACCTATCAAATGTTGAAGCAGGAGGAGAAACAATGTTCCCTTATGAGGGTGGTTTGCATATTGATACGGATTATGATTATCGAAAATGCATTGGTTTGAAGGTTAAGCCACGACAGGGCGATGGACTTTTATTTTATTCACTGTTACCAAACGGGAAAATTGATAAGACTTCTCTTCATGGAAGTTGTCCAGTGATTAAGGGAGAGAAATGGGTGGCAACAAAGTGGATTGATGATGAAGAGCAATAG 1173 0.428 MPNGKAKMWEEDRHQQGGGMDELLAALGYKVRASDMADVAQKLEQLEMVMRSAQEDGISHLASDTVVSIWTCSLVPWKKLLGNQRELSAFMPFLTFSWGYLHFSSFAPFLSLLPFLYLLSSFRFLYCFLSWVLVLSLFTSNAFQDLDDVRSKSRILQEFEKKVYEPVEHGESGESFFDSIPFQILSWRPREVYFPNFTSVEACQQIIEMAKAKLEPSKLALRKGETAESTKDTRTSSGTFISASGDKSGILDMLERKIARVTMIPRSHGEKFNILKYEVGQKYDSHYDAFNPDEYGIVKSQRMASFLLYLSNVEAGGETMFPYEGGLHIDTDYDYRKCIGLKVKPRQGDGLLFYSLLPNGKIDKTSLHGSCPVIKGEKWVATKWIDDEEQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5253g00008 390 FunFam Prolyl 4-hydroxylase 4 181 387 - -
Vium5253g00008 390 Gene3D - 19 68 IPR038088 -
Vium5253g00008 390 Pfam Transcriptional regulator DELLA protein N terminal 21 67 IPR021914 -
Vium5253g00008 390 SMART p4hc 189 386 IPR006620 GO:0005506|GO:0016705|GO:0031418
Vium5253g00008 390 SMART DELLA_2 21 88 - -
Vium5253g00008 390 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 266 387 IPR005123 -
Vium5253g00008 390 Pfam 2OG-Fe(II) oxygenase superfamily 273 385 IPR044862 -
Vium5253g00008 390 Coils Coil 36 56 - -
Vium5253g00008 390 Gene3D q2cbj1_9rhob like domain 182 386 - -
Vium5253g00008 390 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 141 384 IPR045054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5253g00008 Vium-Chr5253 69668 74864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5253g00008 8 66 GRAS Transcription Factor Family AT1G14920 67.797 5.32e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5253g00008 K00472 - gmx:100811068 449.129