Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5253g00006 ATGACGAGCGCTTCGGAGCTATTCCACACCAGAAGGCATCGATTGGGACGAAATTCTATCGATCTAGGGTTCGACACAGAACTCCAAGCCGCCGATTCTTTCCGCCGTCGCCACCACGTCCGCCGCCTCCGTCACCACCCGGAGCGTGCATCTGATAGAGCCGGTGGGAGGTATCGACGGTCTTTTGTAAATGATAGCGTTGATTCCGAAGAAAACGTAAGAGGCAGTCTTGGAGGGAGTAACAGTGAGAGGCTACCCGTGGGTGTGGTTCTTGCACGGGCCAGACTCATTCAGAGGTTGAGAGGGGAACCTCTGTCTAGAAACAGGCAACATGTAGATTCATGGGGTGAGGATCGGGAAAGTGAATCATCACATGAAGTTGCAACTCAGGCCACTCTAGTTACTGACTTGACTTCACAGATGGGAAGGTCCCAGTTCTTGCAGGAACTACACAAAAAGCCACCAGGGCTTACTCAGGAGGCCTTGGACTGTTTGGATCAGGAAGTTTTTAGCAGCAGCGAGGCAGGATTGGATTCCAGGGTAATGCAGGACTGTAGTATATGCTTGGAAACTTTCACGGATGGAGATGAGCTGATACGTCTGCCATGTGGACATAAATTCCATTTTGTTTGCTTGGATCCATGGATTCGCTGCTGTGGAGACTGCCCATATTGTCGAAGACGTGTAGTTCTAAATACTCACTTACCACAATACGACCATGAGTAA 726 0.5014 MTSASELFHTRRHRLGRNSIDLGFDTELQAADSFRRRHHVRRLRHHPERASDRAGGRYRRSFVNDSVDSEENVRGSLGGSNSERLPVGVVLARARLIQRLRGEPLSRNRQHVDSWGEDRESESSHEVATQATLVTDLTSQMGRSQFLQELHKKPPGLTQEALDCLDQEVFSSSEAGLDSRVMQDCSICLETFTDGDELIRLPCGHKFHFVCLDPWIRCCGDCPYCRRRVVLNTHLPQYDHE 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5253g00006 241 MobiDBLite consensus disorder prediction 109 125 - -
Vium5253g00006 241 SMART ring_2 185 225 IPR001841 -
Vium5253g00006 241 CDD RING-H2_PA-TM-RING 184 226 - -
Vium5253g00006 241 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Vium5253g00006 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 230 IPR013083 -
Vium5253g00006 241 SUPERFAMILY RING/U-box 184 235 - -
Vium5253g00006 241 MobiDBLite consensus disorder prediction 109 128 - -
Vium5253g00006 241 Pfam Ring finger domain 184 226 IPR001841 -
Vium5253g00006 241 PANTHER SI:CH211-59O9.10 30 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5253g00006 Vium-Chr5253 57538 59857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5253g00006 1 230 C3H Transcription Factor Family AT1G49850 40.467 3.97e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5253g00006 - - gmx:100814695 378.252