Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5253g00005 ATGCTGCGTCTGTGCTACGCTCCTCTCGATTGCTGCTTCCGACGCCGTGGTTGCCGCGCCGCCGACGCACTGCTCTGGCACACAGACTTGAAGCCCCACGCCTCCGGCGACTTCTCCATCGCCGTCGCACAGGCCAATTACAGTCTCGAGGATCAGAGCCAAGTCTTCACCTCCCCCTCCGCTACCTACGTCGGCGTCTACGACGGCCACGGCGGCCCCGAAGCTTCTAGATTCGTCAACAAACGACTCTTCCCTTATTTACACAAATTTGCCACTGAGCAAGGCGGTTTGTCTGTGGATGTGATAAAAAAGGCATTTAGTGCCACAGAGGAGGAATTCCTGCACTTGGTGAAGCTTTCCTTGCCCATTAGTCCTCAGATTGCTTCTGTGGGATCCTGTTGTCTTTTTGGTGCAATTTCTAATAATGTGTTGTACGTTGCCAACCTCGGAGACTCTAGAGCTGTTCTTGGAAGGAGGGATGTCCAGAGAAAGAACAGTCCAGTGGTGGCACAGCGCTTGTCAACTGATCATAATGTAGCTGATGCGGAGGTGAGAAGAGAAGTTGAAGCTCTCCATCCTGATGACTCACACATAGTGGTTTATAGCCGAGGAGTTTGGAGGATAAAGGGCATTATTCAGGTTTCAAGATCTATTGGTGATGTGTATTTAAAGAAACCTGATTTCTACCGAGACCCTGCTTTTCAGCAATTTGGAAATCCTATTCCTTTGAAGCGTCCCGTGATGACAGCTGAACCTTCAATCATTATCAGGGAGCTTGAGTCGGAGGATTTATTCTTGATATTTGCTTCCGATGGACTGTGGGAACAATTAAGTGATGAAGCAGCAGTTCAGATTGTTTTCAAGTATCCAAGAGCTGGAATTGCCAAGAGACTGGTGAGAGCGGCTCTTCAAGAAGCTGCAAAGAAGAGAGAGATGAGATATGATGACATAAAAAAAATCGACAAAGGAATACGACGACACTTCCATGATGATATCACCGTGATTGTAATCTATCTTGATCACCATGCGGGATCCTCTAATGGTAGATTCAAGCAAACTGCTGTTGGCTATACAACTGCTCCTGTTGATATTTTTTCCCAAAATGCGGACGAAGCAGAAAAGAGAATGCTTGGTACAATTGCCTGA 1146 0.4738 MLRLCYAPLDCCFRRRGCRAADALLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKRLFPYLHKFATEQGGLSVDVIKKAFSATEEEFLHLVKLSLPISPQIASVGSCCLFGAISNNVLYVANLGDSRAVLGRRDVQRKNSPVVAQRLSTDHNVADAEVRREVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKKPDFYRDPAFQQFGNPIPLKRPVMTAEPSIIIRELESEDLFLIFASDGLWEQLSDEAAVQIVFKYPRAGIAKRLVRAALQEAAKKREMRYDDIKKIDKGIRRHFHDDITVIVIYLDHHAGSSNGRFKQTAVGYTTAPVDIFSQNADEAEKRMLGTIA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5253g00005 381 SMART PP2C_4 31 337 IPR001932 -
Vium5253g00005 381 Gene3D - 28 348 IPR036457 -
Vium5253g00005 381 SUPERFAMILY PP2C-like 46 341 IPR036457 -
Vium5253g00005 381 PANTHER PROTEIN PHOSPHATASE 36 338 IPR015655 GO:0004722|GO:0006470
Vium5253g00005 381 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Vium5253g00005 381 CDD PP2Cc 50 339 IPR001932 -
Vium5253g00005 381 ProSiteProfiles PPM-type phosphatase domain profile. 37 339 IPR001932 -
Vium5253g00005 381 FunFam Probable protein phosphatase 2C 42 28 347 - -
Vium5253g00005 381 Pfam Protein phosphatase 2C 58 308 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5253g00005 Vium-Chr5253 42481 45619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5253g00005 22 346 PP2C-type Phosphatase Gene Family AT3G51370 57.357 6.68e-140 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5253g00005 - K01102 gmx:100812137 717.613