Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5247g00010 ATGGGTTGCTTTTCTTGTTTCGATTCGAGGGAAGACGAGAAGCTGAATCCCAACCCTCACCAGGAAAACCATCATCATCTTCATCATCATCACGATCATGATCTTAATCCCCCTATCCCCTCTCGTATTTCCAGACTGCCCTCTGCCTCTGCCGGAGCAGACAAGCTACGCTCATCTAGCAATGGCAATGGTAACAATGGTGACTCCAAAAGGGAATTGGCTGCTCTCAAGGACGGACCTGCTGTACAAATTGCCGCACAGACTTTCACTTTCCGTGAACTGGCAGCCGCCACCAAAAATTTCAGGCCCCAATCCTTTTTGGGGGAAGGTGGTTTCGGAAGGGTTTACAAGGGCCGCCTTGAAACCACTGGTCAGGCTGTGGCTGTTAAACAGTTAGACAGAAACGGTCTTCAGGGCAACCGGGAATTCCTCGTGGAGGTTCTCATGCTCAGTCTTCTACACCACCCTAATCTTGTCAATCTCATTGGATACTGTGCGGACGGGGACCAACGCCTCTTAGTTTATGAGTTTATGCCATTGGGATCATTGGAAGACCACCTTCATGATCTTCCCCCGGAGAAGGAACCATTGGATTGGAACACTAGGATGAAAATAGCTGCTGGGGCAGCAAAAGGATTGGAATACCTTCACGACAAGGCAAATCCTCCTGTCATTTATAGAGATTTCAAATCGTCTAATATATTACTTGACGAAGATTATCATCCAAAGCTTTCAGACTTTGGGCTTGCAAAGCTTGGACCAGTTGGTGACAAATCACACGTGTCCACCCGGGTCATGGGAACTTATGGATATTGTGCCCCAGAATATGCTATGACTGGACAGCTGACTGTGAAGTCTGATGTATATAGTTTTGGGGTAGTCTTCTTGGAGCTGATTACTGGGCGTAAAGCCATTGACAGCACTCGACCCCATGGAGAACAAAACCTTGTCACATGGGCACGTCCACTGTTCAATGACCGCAGAAAGTTTCCAAAGTTAGCAGATCCAGAGCTACATGGACGGTATCCCATGCGGGGTCTTTACCAAGCTCTAGCAGTGGCATCAATGTGCATTCAGGAACAGGCCGCAGCGCGTCCTCTCATTGGGGATGTGGTGACAGCCCTTTCTTTTCTAGCGAACCAGGCATATGACCATAAGGGAGGTGGTGATGATAAAAGGAACAGAGATGATCAGGGTGGAAGAATATTGAAAAATGACCAAGGTGGAGGATCTGGAAGGAGATGGGATTTGGAAGGGTGTGAGAAAGATGAGTCCCCACGTGAAACTGCAAGGATGTTAAACAACAGGGATCTTGATAGAGAACGTGCGGTGGCTGAAGCAAAGATGTGGGGAGAGAATTGGAGAGAGAAAAGACGACAAAGTGCGCAGGGCAGTTTTGATGGTTCTAACGCCTAG 1416 0.4816 MGCFSCFDSREDEKLNPNPHQENHHHLHHHHDHDLNPPIPSRISRLPSASAGADKLRSSSNGNGNNGDSKRELAALKDGPAVQIAAQTFTFRELAAATKNFRPQSFLGEGGFGRVYKGRLETTGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPEKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEDYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFNDRRKFPKLADPELHGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSFLANQAYDHKGGGDDKRNRDDQGGRILKNDQGGGSGRRWDLEGCEKDESPRETARMLNNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDGSNA 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5247g00010 471 MobiDBLite consensus disorder prediction 385 402 - -
Vium5247g00010 471 Gene3D Transferase(Phosphotransferase) domain 1 178 398 - -
Vium5247g00010 471 FunFam Serine/threonine-protein kinase PBS1 74 177 - -
Vium5247g00010 471 MobiDBLite consensus disorder prediction 11 38 - -
Vium5247g00010 471 FunFam Serine/threonine-protein kinase PBS1 178 393 - -
Vium5247g00010 471 MobiDBLite consensus disorder prediction 11 71 - -
Vium5247g00010 471 ProSiteProfiles Protein kinase domain profile. 101 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5247g00010 471 MobiDBLite consensus disorder prediction 53 68 - -
Vium5247g00010 471 MobiDBLite consensus disorder prediction 415 462 - -
Vium5247g00010 471 Pfam Protein kinase domain 104 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5247g00010 471 CDD STKc_IRAK 107 375 - -
Vium5247g00010 471 Gene3D Phosphorylase Kinase; domain 1 85 177 - -
Vium5247g00010 471 PANTHER OS07G0668900 PROTEIN 25 386 - -
Vium5247g00010 471 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Vium5247g00010 471 SUPERFAMILY Protein kinase-like (PK-like) 83 377 IPR011009 -
Vium5247g00010 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vium5247g00010 471 MobiDBLite consensus disorder prediction 383 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5247g00010 Vium-Chr5247 49422 54139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5247g00010 1 459 Glycoside Hydrolase AT3G07070 56.061 3.76e-170 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium5247g00010 Pkinase 7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5247g00010 K13430 - gmx:100777987 810.831