Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5247g00004 ATGGCAGCTGCATTTGCATCTTCGACTACCACATTCAGACTGTCAAATTTTGGAGATATCAAAGGTTTGCACCTCCATAACCCTAATTCTAATAATCTCAAGTTTAGGACGCCGGCGTCTGGGTTTGGCGGTTGTCATGGAGTGACATTGAGTGTGAAAGAAAGGGAAGTTGGAAGGGGTTTGAGGGTTCGGGCGAGTTCTTCTTCGGGGGAGGACGCAAGTGTTCAGGCTAAAGTGACTCAGAAAGTATTCTTCGACATTAGTATCGGAAATCCAGTTGGGAAGCTTGTCGGAAGGGTTGTCATTGGACTGTACGGCGACGATGTTCCCCAAACAGCCGAGAACTTCCGTGCCCTCTGCACCGGAGAGAAGGGCTTTGGGTATAAGGGCTCTACCTTCCATCGTGTTATCAAGGATTTCATGATTCAAGGGGGCGATTTTGACAAAGGAAATGGAACTGGAGGCAAGAGTATATATGGTCGCACTTTCAAAGATGAGAATTTTATTTTGTCTCATACTGGACCCGGAGTTGTTAGCATGGCAAATGCAGGTCCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCATGGTTGGATCAGAGACATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATCGAATCCCAGGAGACAGATAGGGGTGACCGTCCTAGAAAAAACGTGACCATCAGCGACTGTGGTGAGCTTCCAATTGCTTGA 747 0.4672 MAAAFASSTTTFRLSNFGDIKGLHLHNPNSNNLKFRTPASGFGGCHGVTLSVKEREVGRGLRVRASSSSGEDASVQAKVTQKVFFDISIGNPVGKLVGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFILSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPRKNVTISDCGELPIA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5247g00004 248 Gene3D - 70 248 IPR029000 -
Vium5247g00004 248 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 82 245 - -
Vium5247g00004 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 176 191 IPR002130 GO:0000413|GO:0003755
Vium5247g00004 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Vium5247g00004 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 145 IPR002130 GO:0000413|GO:0003755
Vium5247g00004 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 219 IPR002130 GO:0000413|GO:0003755
Vium5247g00004 248 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 191 203 IPR002130 GO:0000413|GO:0003755
Vium5247g00004 248 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 84 244 IPR002130 GO:0000413|GO:0003755
Vium5247g00004 248 SUPERFAMILY Cyclophilin-like 75 245 IPR029000 -
Vium5247g00004 248 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 97 243 IPR002130 GO:0000413|GO:0003755
Vium5247g00004 248 FunFam Peptidyl-prolyl cis-trans isomerase 69 248 - -
Vium5247g00004 248 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 128 145 IPR020892 GO:0003755|GO:0006457
Vium5247g00004 248 CDD cyclophilin_ABH_like 82 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5247g00004 Vium-Chr5247 37352 39951 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5247g00004 98 239 U-box Gene Family AT5G67530 48.252 7.88e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5247g00004 K03768 - gmx:100777088 400.593