Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5246g00002 ATGGATGAAATGTACGGAGTGCCGGACTACGCCGACAAGCCACTCATGACTCCGGAGAATCTGATTTTCCCTCCGGACTACCCCGCCTTCCTCACAGCGGCCCGGATTCCTATCTTCGGATCCGACGACCTCTTCTCCGGCGAGCCTTCCGCCGCTTCCGCCTCTCCTGCTGGAATTCCGCGCCACCAGGACGATGACGTCGCAACCACTGTCATGAAGGCAAAAATCGCCTCCCACCCTCACTACCCTCGCCTCCTCCAAGCTTACATCGATTGCCAGAAGGTTGGGGCGCCTCCAGAAATCGCGCGTCTGTTGGAGGAAATCCGGCGAGAAAACGACCTGTGCAAGAGCGACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGACATGCTCGTGAAGTATAAATCCGACTTGGCTCGCCCCTTTGACGAAGCAACCACTTTCCTCAACAAGATCGAAATGCAGCTAAGCCATCTCTGCACTGGCGCTTCTGTTTCCACCGTTTCTGACGAAGATTTGAGTACAGGAGATGGTGATGGTCAAGATGGGCAATCAAAGGGTGAAGATCGTGAACTGAAGGATAGACTCTTACGGAAGTTTGGGAGTCACATTGGTACTTTGAAACTGGAGTTTTCAAAAAAGAAAAAGAAAGGTAAACTTCCGAAGGAAGCAAGACAAACATTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCCACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAACCAGAGAAAACGTCATTGGAAACCATCCGAGAATATGCAGTTTTCCATGATGGAAAATCTTAACGGACGGTTCCTTGGTGATGAATGA 915 0.5005 MDEMYGVPDYADKPLMTPENLIFPPDYPAFLTAARIPIFGSDDLFSGEPSAASASPAGIPRHQDDDVATTVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKSDVVSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVSTVSDEDLSTGDGDGQDGQSKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLGDE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5246g00002 304 SMART KNOX2_2 120 171 IPR005541 GO:0003677|GO:0005634
Vium5246g00002 304 SUPERFAMILY Homeodomain-like 222 293 IPR009057 -
Vium5246g00002 304 Gene3D - 220 294 - -
Vium5246g00002 304 Pfam KNOX1 domain 72 113 IPR005540 GO:0003677|GO:0005634
Vium5246g00002 304 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
Vium5246g00002 304 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Vium5246g00002 304 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 66 291 - -
Vium5246g00002 304 Pfam KNOX2 domain 124 170 IPR005541 GO:0003677|GO:0005634
Vium5246g00002 304 SMART ELK_2 201 222 IPR005539 GO:0003677
Vium5246g00002 304 MobiDBLite consensus disorder prediction 178 200 - -
Vium5246g00002 304 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Vium5246g00002 304 CDD homeodomain 233 285 IPR001356 GO:0003677
Vium5246g00002 304 SMART HOX_1 223 288 IPR001356 GO:0003677
Vium5246g00002 304 Pfam ELK domain 201 222 IPR005539 GO:0003677
Vium5246g00002 304 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
Vium5246g00002 304 SMART KNOX1_2 70 114 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5246g00002 Vium-Chr5246 4393 18616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5246g00002 1 304 Homeobox Transcription Factor Family AT1G23380 65.957 5.14e-142 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium5246g00002 KNOX2 3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5246g00002 - - gmx:100794719 499.204