Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5246g00001 ATGGATGAAATGTACGGAGTGCCGGACTACGCCGACAAGCCACTCATGACTCCGGAGAATCTGATTTTCCCTCCGGACTACCCCGCCTTCCTCACAGCGGCCCGGATTCCTATCTTCGGATCCGACGACCTCTTCTCCGGCGAGCCTTCCGCCGCTTCCGCCTCTCCTGCTGGAATTCCGCGCCACCAGGACGATGACGTCGCAACCACTGTCATGAAGGCAAAAATCGCCTCCCACCCTCACTACCCTCGCCTCCTCCAAGCTTACATCGATTGCCAGAAGGTTGGGGCGCCTCCAGAAATCGCGCGTCTGTTGGAGGAAATCCGGCGAGAAAACGACCTGTGCAAGAGCGACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGACATGCTCGTGAAGTATAAATCCGACTTGGCTCGCCCCTTTGACGAAGCAACCACTTTCCTCAACAAGATCGAAATGCAGCTAAGCCATCTCTGCACTGGCGCTTCTGTTTCCACCGTTTCTGATGATGGTGGTTTGTCTTCAGACGAAGATTTGAGTACAGGAGATGGTGATGGTCAAGATGGGCAATCAAAGGGTGAAGATCGTGAACTGAAGGATAGACTCTTACGGAAGTTTGGGAGTCACATTGGTACTTTGAAACTGGAGTTTTCAAAAAAGAAAAAGAAAGGTAAACTTCCGAAGGAAGCAAGACAAACATTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCCACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAACCAGAGAAAACGTCATTGGAAACCATCCGAGAATATGCAGTTTTCCATGATGGAAAATCTTAACGGACGGTTCCTTGGTGATGAATGA 936 0.4989 MDEMYGVPDYADKPLMTPENLIFPPDYPAFLTAARIPIFGSDDLFSGEPSAASASPAGIPRHQDDDVATTVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKSDVVSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVSTVSDDGGLSSDEDLSTGDGDGQDGQSKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLGDE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5246g00001 311 ProSitePatterns 'Homeobox' domain signature. 266 289 IPR017970 GO:0000981|GO:0006355
Vium5246g00001 311 ProSiteProfiles ELK domain profile. 208 228 IPR005539 GO:0003677
Vium5246g00001 311 SMART KNOX2_2 120 171 IPR005541 GO:0003677|GO:0005634
Vium5246g00001 311 SMART HOX_1 230 295 IPR001356 GO:0003677
Vium5246g00001 311 Pfam KNOX2 domain 124 170 IPR005541 GO:0003677|GO:0005634
Vium5246g00001 311 Pfam ELK domain 208 229 IPR005539 GO:0003677
Vium5246g00001 311 SMART ELK_2 208 229 IPR005539 GO:0003677
Vium5246g00001 311 Pfam Homeobox KN domain 248 287 IPR008422 GO:0003677|GO:0006355
Vium5246g00001 311 MobiDBLite consensus disorder prediction 179 209 - -
Vium5246g00001 311 CDD homeodomain 240 292 IPR001356 GO:0003677
Vium5246g00001 311 Gene3D - 227 301 - -
Vium5246g00001 311 ProSiteProfiles 'Homeobox' domain profile. 228 291 IPR001356 GO:0003677
Vium5246g00001 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 66 298 - -
Vium5246g00001 311 SUPERFAMILY Homeodomain-like 229 300 IPR009057 -
Vium5246g00001 311 Pfam KNOX1 domain 72 113 IPR005540 GO:0003677|GO:0005634
Vium5246g00001 311 SMART KNOX1_2 70 114 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5246g00001 Vium-Chr5246 4049 18613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5246g00001 1 311 Homeobox Transcription Factor Family AT1G23380 67.781 2.29e-147 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium5246g00001 KNOX2 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5246g00001 - - gmx:100794719 502.671