Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5241g00002 ATGCAGAAGAAGTCGACATTGCCACTGAGCGACGCGAATGCGAACAGAAAGAGGAAGGAAGTGCGCAGCAAGGAAACATTGGTGAAGCTTCTAAGATGGCATTTTGGGTACCCTGATTTTAGGGGCATGCAATTGGACGCTATTCAGTCGGTGCTTTCAGGAAAGGATTGTTTTTGTCTTATGCCGACTGGGGGAGGCAAGTCAATGTGTTATCAGATCCCTGCATTGGCAAAACCAGGAATTGTGCTCGTTGTATCTCCTTTAATAGCCTTAATGGAAAACCAAGTAATGGCACTGAAAGAGAAAGGGATTGCAGCAGATTTTCTCTCCTCAACAAAAACAGCGGATGCTAAAGTAAAGATTCACGAGGACCTTGATTCTGGAAAACCTTCTACAAGGCTGCTATATGTGACTCCAGAGTTAATAGCAACACCAGGGTTTATGTCAAAGCTCACAAAGATTTATACTAGGGGGCTGCTAAATCTCATTGCCATAGATGAGGCGCATTGCATCTCAAGTTGGGGTCATGATTTCAGACCTAGCTACCGTAAGCTTTCATCTTTGAGAAGCCACCTACCAGATGTACCAATATTAGCTTTGACTGCTACTGCTGCGCCAAAGGTTCAGAAGGATGTAGTTGAATCCTTGCGGATGCAAAATCCATTAATACTCAAGTCTTCATTTAATCGTCCAAATATATATTATGAAGTTAGATACAAAGATCTATTGGATGATGCTTTTGCTGATTTATCTAATACACTCAAATCTCTGGGAGATGTCTGTGCAATAGTGTATTGCCTTGAACGTTCAATGTGTGATGACTTATCAAGTAATCTATCCCAAAGTGGTATTTCATGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCGGTGTTAGATGATTGGATTTCTTCTAAGATAAAAGTTATTGTTGCTACTGTGGCTTTTGGAATGGGCATTGATAGAAAGGATGTCAGAATTGTTTGCCATTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCCGGCCGAGCTGGTCGTGATCAATTGCCATCTAGAAGTCTGTTGTACTATGGGATAGACGATCGCAAAAGAATGGAATTTATATTAAGTAAATCGGGGAGCAAGAAGTCATCTAGTTCACAGGAAGAGTCATCCAAAATATCCCTGATTGCTTTCAATCAGATAGTTGAATACTGTGAAGGATCTGGATGCCGCAGGAAAAGAATTCTTGAGAGTTTTGGGGAACAGGTAACTGCATCACTATGTGGAAAAACATGTGATGCCTGCAGACATGCAAACTTAGTTGCTCGATGTTTGGAGGATCTCAAAACTGTTTGTGCTCTGCGTCATAAAAATGGTTCATCTCGAGTTTTTATAACCAGTTCCACTGCCGCAACTACTGGAGAACAGTTATCTGAATTCTGGAATCGGGGAGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGATTCAGAAGATGGTAATGAGGTTATCAACAACCTAACCAGGTCAAAGCTTCAATCCAGATTGGGAGTAAATGAGAAGCTTGCTATGTTACAACGGGCAGAAGAAAACTTCTATAGAAATAATAACACTTATANAAATGTAGTTGATCCAACCGATGAAGTTTTCTATCTTAATGATCATGGTTCAGAAGGATTTAGATACAAAGATCTATTGGATGATGCTTTTGCTGATTTATCTAATACACTCAAATCTCTGGGAGATGTCTGTGCAATAGTGTATTGCCTTGAACGTTCAATGTGTGATGACTTATCAAGTAATCTATCCCAAAGTGGTATTTCATGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCGGTGTTAGATGATTGGATTTCTTCTAAGATAAAAGTTATTGTTGCTACTGTGGCTTTTGGCATGCCATTACATGTTGGTGTGTGCTGTGGGGGGTTGATGAATTTTGTGGCCCTGTTCATAGTAGTGGCCATAAGATCTACGGATTACAATGATTTCTGGCATGATACTTGGTGCGACATCTACCAAGCTAAAATGCTCTGTGATGGGACTTTTGTAGAGACCAAGGGCCATGGAGCCATGATGTTACTGAGCCTTTGGTCTTCATTTAGAATGGGCATTGATAGAAAGGATGTCAGAATTGTTTGCCATTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCCGGCCGAGCTGGTCGTGATCAATTGCCATCTAGAAGTCTGTTGTACTATGGGATAGACGATCGCAAAAGAATGGAATTTATATTAAGTAAATCGGGGAGCAAGAAGTCATCTAGTTCACAGGAAGAGTCATCCAAAATATCCCTGATTGCTTTCAATCAGATAGTTGAATACTGTGAAGGATCTGGATGCCGCAGGAAAAGAATTCTTGAGAGTTTTGGGGAACAGGTAACTGCATCACTATGTGGAAAAACATGTGATGCCTGCAGACATGCAAACTTAGTTGCTCGATGTTTGGAGGATCTCAAAACTGTTTGTGCTCTGCGTCATAAAAATGGTTCATCTCGAGTTTTTATAACCAGTTCCACTGCCGCAACTACTGGAGAACAGTTATCTGAATTCTGGAATCGGGGAGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGATTCAGAAGATGGTAATGAGGTTATCAACAACCTAACCAGGTCAAAGCTTCAATCCAGATTGGGAGTAAATGAGAAGCTTGCTATGTTACAACGGGCAGAAGAAAACTTCTATAGAAATAATAACACTTATAAACAGAACAACAAAGGTGACAAGAATGCTATTTCGGATCCAATGCGAGGATCAAGCAGGCAAAGGTTACAAAATGCTCTTAAACAGGTCCACCAACGGCTTGACGACTTCAAGATTGAAGTGGATACGTCAGCATCTTTCCTTGAAGATGAATGCTACAAGAAGTATGGCAAGGCTGGCAAATCATTCTATTATTCGCAAGTGGCAAGTACTGTAAGATGGCTGACGACTGCCACCTCCAGCGAATTGATGAACCGACTTTGTGCAATTAATGCTTCTGCTGAAGCTGAACAGTCCCTTACGCCAGCTGAACAGCCCTTCAAACCGCCACCTACTTTAGATCCTTGTGCAGAAGATACCAGCAATGAATACTCTGGCAATGCTAGATCAGAAACTTCTCCATGTATTGTGCCAATGGAAAGCTGTTCGTTTAATAATACCAACTTGCCACAAATACCATCCTTCTCTGAATTCCTAAATAGTAGGAAAACAAAAGGGGACCAGTTAAATGACACAAAGAAGCATTCAAGAATCGAAAAGAGGATGAGGATGCAGTAA 3354 0.4076 MQKKSTLPLSDANANRKRKEVRSKETLVKLLRWHFGYPDFRGMQLDAIQSVLSGKDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAADFLSSTKTADAKVKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLTKIYTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAAPKVQKDVVESLRMQNPLILKSSFNRPNIYYEVRYKDLLDDAFADLSNTLKSLGDVCAIVYCLERSMCDDLSSNLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVIVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGIDDRKRMEFILSKSGSKKSSSSQEESSKISLIAFNQIVEYCEGSGCRRKRILESFGEQVTASLCGKTCDACRHANLVARCLEDLKTVCALRHKNGSSRVFITSSTAATTGEQLSEFWNRGEEASGSEEDISDSEDGNEVINNLTRSKLQSRLGVNEKLAMLQRAEENFYRNNNTYXNVVDPTDEVFYLNDHGSEGFRYKDLLDDAFADLSNTLKSLGDVCAIVYCLERSMCDDLSSNLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVIVATVAFGMPLHVGVCCGGLMNFVALFIVVAIRSTDYNDFWHDTWCDIYQAKMLCDGTFVETKGHGAMMLLSLWSSFRMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLLYYGIDDRKRMEFILSKSGSKKSSSSQEESSKISLIAFNQIVEYCEGSGCRRKRILESFGEQVTASLCGKTCDACRHANLVARCLEDLKTVCALRHKNGSSRVFITSSTAATTGEQLSEFWNRGEEASGSEEDISDSEDGNEVINNLTRSKLQSRLGVNEKLAMLQRAEENFYRNNNTYKQNNKGDKNAISDPMRGSSRQRLQNALKQVHQRLDDFKIEVDTSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTATSSELMNRLCAINASAEAEQSLTPAEQPFKPPPTLDPCAEDTSNEYSGNARSETSPCIVPMESCSFNNTNLPQIPSFSEFLNSRKTKGDQLNDTKKHSRIEKRMRMQ 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5241g00002 1117 CDD DEXHc_RecQ 29 229 - -
Vium5241g00002 1117 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 394 IPR001650 -
Vium5241g00002 1117 PANTHER DNA HELICASE RECQ FAMILY MEMBER 16 483 - -
Vium5241g00002 1117 FunFam ATP-dependent DNA helicase 21 229 - -
Vium5241g00002 1117 Gene3D - 2 229 IPR027417 -
Vium5241g00002 1117 MobiDBLite consensus disorder prediction 1096 1117 - -
Vium5241g00002 1117 MobiDBLite consensus disorder prediction 1093 1117 - -
Vium5241g00002 1117 Pfam RecQ zinc-binding 760 829 IPR032284 -
Vium5241g00002 1117 Pfam RecQ zinc-binding 367 436 IPR032284 -
Vium5241g00002 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 374 IPR027417 -
Vium5241g00002 1117 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 829 IPR027417 -
Vium5241g00002 1117 MobiDBLite consensus disorder prediction 930 950 - -
Vium5241g00002 1117 SMART helicmild6 273 354 IPR001650 -
Vium5241g00002 1117 SMART helicmild6 596 747 IPR001650 -
Vium5241g00002 1117 Gene3D - 554 847 IPR027417 -
Vium5241g00002 1117 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Vium5241g00002 1117 CDD SF2_C_RecQ 230 363 - -
Vium5241g00002 1117 Coils Coil 952 972 - -
Vium5241g00002 1117 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 576 787 IPR001650 -
Vium5241g00002 1117 NCBIfam RecQ family ATP-dependent DNA helicase 30 440 IPR004589 GO:0004386|GO:0006310
Vium5241g00002 1117 Pfam DEAD/DEAH box helicase 43 210 IPR011545 GO:0003676|GO:0005524
Vium5241g00002 1117 Pfam Helicase conserved C-terminal domain 576 745 IPR001650 -
Vium5241g00002 1117 Pfam Helicase conserved C-terminal domain 253 352 IPR001650 -
Vium5241g00002 1117 Gene3D - 230 454 IPR027417 -
Vium5241g00002 1117 MobiDBLite consensus disorder prediction 1030 1063 - -
Vium5241g00002 1117 SMART ultradead3 36 238 IPR014001 -
Vium5241g00002 1117 FunFam RecQ family DNA helicase 230 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5241g00002 Vium-Chr5241 11798 28271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5241g00002 33 352 Eukaryotic Initiation Factors Gene Family AT3G19760 21.958 1.98e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5241g00002 K10901 - gmx:100819601 956.436