Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5234g00004 ATGATTCACTTTACCTCACGCCTATGTTCTGTTCTATTGTTCTTCACTTCTACAAGCACTGGCAAAGGTATTTGCAAAAGGAAGGATAATGTCCCAGAGCTTGCATGTGCGAGGTATCAAAGCCTTTGTATTCACTCTCTGTCACAATTCTCCAACACTGCTGGAAGAAGCCCTAGCAAGTGGGCACGTGCGGGAGTGTCAGTGTCCATTGGCGAGGTTAAGAATGTTAAAGCGTATCTTGCAGAATTGAAGAAGCATGGACACATGAAGGGAAGAAACAAAGTTGCCCTTTCAGATTGTGTTGAATGTTTTTCCTATGCCCTTGACGAGCTTCACAGATCACTTGGTGTGCTTAGGAGGCTAAGCAAAAGCACGTTTAGCACCCAAATGGGGGACCTGAACACGTGGATCAGTGCAGCACTCACCGATGAAGAAACTTGCCTGGAAGGGTTTGAAGGAGAAAATGAGAAGCACGTTAAAGTGCTGCAAAACCGTGTTCAGAATGTGTCTTACATCACCAGCAACGCTCTTGCTCTAGTCAACAAACTTGCCACCACAGGTCTGGGAAGAATCAACGACCCCTAG 585 0.4615 MIHFTSRLCSVLLFFTSTSTGKGICKRKDNVPELACARYQSLCIHSLSQFSNTAGRSPSKWARAGVSVSIGEVKNVKAYLAELKKHGHMKGRNKVALSDCVECFSYALDELHRSLGVLRRLSKSTFSTQMGDLNTWISAALTDEETCLEGFEGENEKHVKVLQNRVQNVSYITSNALALVNKLATTGLGRINDP 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5234g00004 194 Pfam Plant invertase/pectin methylesterase inhibitor 35 179 IPR006501 GO:0004857
Vium5234g00004 194 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 179 - -
Vium5234g00004 194 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 185 IPR035513 -
Vium5234g00004 194 FunFam Pectinesterase inhibitor 3 28 184 - -
Vium5234g00004 194 NCBIfam pectinesterase inhibitor domain 18 183 IPR006501 GO:0004857
Vium5234g00004 194 SMART PMEI_2 16 179 IPR006501 GO:0004857
Vium5234g00004 194 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 183 IPR035513 -
Vium5234g00004 194 CDD PMEI-like_3 34 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5234g00004 Vium-Chr5234 17065 17736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5234g00004 38 188 Carbohydrate Esterase AT3G14310 33.333 2.26e-16 74.7