Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5233g00005 ATGGGCGTGAAGAACTTGTGGGACGTGTTGGAATCGTGCAAGAAAAGGGTTCCCCTTCACCATCTACAGAACAAGAGGGTGTGCGTGGACCTCTCGTGCTGGATGGTGCAGCTTCACAGCGTGAGCAAGTCCCACGCTTGCGTAAAGGAGAAAGTGTATCTTAAAGGGCTCTTTCACCGACTCAGAGCACTCATTGCGCTCAATTGCAGCCTCGTCTTCGTCACAGATGGATCAATTCCTGCCATAAAATTATCAACCTATAGGCGTCGTTTAAATGTTGGAAAGGAGGTAGCACTAAACGAAACAAAGCTACAGAAAGTGACTTCGTTACAGAGAAACATGGGGTCTGAGTTTTCTTGCATGATTAGAGAGGCTAAAATGTTGGGGATGGCTCTTGGAATTTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAATGTGCTTTGTTGAATTTTGAATCATTATGTGATGGATGTTTTAGTCTAGATTCAGACATATTCCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGACGGTGGGTATGTTGTTTGTTATGAGATGACAGATATCGAAAGAAAACTTGGACTTGGAAGGGACTCATTGATTGCTCTCTCCTTGCTTCTTGGCAGTGATTACTATCAAGGAGTTCATGGTCTGGGTCCAGAGTCGGCTTGTCAGATAGTCAAATCAATTGGGGACAAAAATGTTCTTCAAAAAATTGCTTCTGAAGGACTTGGATGGGTGAAGAAAAGAAGAGGAGGCAGGAACGATTTTGGGCTGGATGATAACATTTTAGAAGTAATTAATGCTTATATGAAGCCAAAATGTCACTCAGCTGATTCAGATATTGTGCTCAAGGCTTTTGCTCAATATACGTTTCAACGTACTAAACTCCAGCAGCTATGTGCTGAATTCTTTCTGTGGCCTTCGGAGAAAACAGATGGGTATATACTTCCAAGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTAAAGTTGGACTGGACCTTCCTTTACATGAGATCCCTGTAAAGTGTCCTGTCTCAGAAATCATCAAGAGCAGAAGAGTGCATGGGAGAGAATGCTATGAGGTTTCTTGGGAAGGAATGGATGGACTAGAAACTTCAATAGTCCCTGCAGATCTTATAGAAAGTGCCTGCCGTGAGAAGATTTTGGAGTTTGAGGAAAGAAAAGCTCAACGGAAGAAACAAAATAATCAGAAAAGAAGACCAAAGAAAAAGGAAACTAATTCATCTCTTGCTGAGCTTGATCTAAAGCTTCAGAATTTGTTGCTTGATAATAGTTTGAGAGATCAAGACAACTTCAATGCCTGTGATTCTTCAGAAAGGGTATCAAGGATTGCAACTCCTATGGCTGATGAAGCTGATCTTAATACAGAAGACTTGTTGCATCTATCACATGACATAGAACACACTGGGTTGATTCAGAATACTAGCAACTTATATATTACCAATAAGGAAGTTTCCACTACAGGTAAAAATGAGATCATAGATCTTCTGAGCCCTTCCCCACCTAAAAAAATCATTTCTCTCTCAAAATCTCTGCAACCAAGTGACCAAAATATCGAAGTGATTAATTTGAGTGATTCAGAAAATGACATGTCTGTTGAACACAAGCAGAAAACCAAGGAACTGAGATTGTTCTTAGCTAGTATTAGGAATGAAATTCATTGA 1725 0.4052 MGVKNLWDVLESCKKRVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLKGLFHRLRALIALNCSLVFVTDGSIPAIKLSTYRRRLNVGKEVALNETKLQKVTSLQRNMGSEFSCMIREAKMLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSLDSDIFLFGARTVYRDICLGDGGYVVCYEMTDIERKLGLGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDKNVLQKIASEGLGWVKKRRGGRNDFGLDDNILEVINAYMKPKCHSADSDIVLKAFAQYTFQRTKLQQLCAEFFLWPSEKTDGYILPSIAERDLRRFANLRLTSSKVGLDLPLHEIPVKCPVSEIIKSRRVHGRECYEVSWEGMDGLETSIVPADLIESACREKILEFEERKAQRKKQNNQKRRPKKKETNSSLAELDLKLQNLLLDNSLRDQDNFNACDSSERVSRIATPMADEADLNTEDLLHLSHDIEHTGLIQNTSNLYITNKEVSTTGKNEIIDLLSPSPPKKIISLSKSLQPSDQNIEVINLSDSENDMSVEHKQKTKELRLFLASIRNEIH 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5233g00005 574 SMART xpgineu 130 200 IPR006086 GO:0004518
Vium5233g00005 574 Gene3D - 2 199 - -
Vium5233g00005 574 Gene3D - 200 256 - -
Vium5233g00005 574 CDD PIN_GEN1 2 200 - -
Vium5233g00005 574 CDD CD_CSD 358 406 - -
Vium5233g00005 574 FunFam Flap endonuclease GEN-like 1 200 256 - -
Vium5233g00005 574 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Vium5233g00005 574 ProSiteProfiles Chromo and chromo shadow domain profile. 356 416 IPR000953 -
Vium5233g00005 574 FunFam flap endonuclease GEN-like 2 2 199 - -
Vium5233g00005 574 MobiDBLite consensus disorder prediction 408 429 - -
Vium5233g00005 574 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Vium5233g00005 574 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Vium5233g00005 574 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 459 IPR006084 -
Vium5233g00005 574 Gene3D - 355 423 - -
Vium5233g00005 574 SUPERFAMILY Chromo domain-like 357 412 IPR016197 -
Vium5233g00005 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Vium5233g00005 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Vium5233g00005 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Vium5233g00005 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Vium5233g00005 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vium5233g00005 574 SMART xpgn3 1 97 IPR006085 GO:0004518
Vium5233g00005 574 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Vium5233g00005 574 CDD H3TH_XPG-like 203 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5233g00005 Vium-Chr5233 74975 95431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5233g00005 1 236 Core DNA Replication Machinery Family AT5G26680 24.806 1.73e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5233g00005 K15338 - gmx:100806919 923.694