LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium5233g00001	ATGTCTCATCAACAGCAGCAATCCATTGATCCCTATCGCCACCTCGATGTCGTTCTAAACCCTAACGGCACCCTCACTCGTTCACGTCACCTTCCAATCACACCACCAAATTCCGACCCCACTCTCCCACTTCTCACCAAAGACATAACCATCAACCCACAAAACAACACCTGGCTACGTTTATTCTTGCCCCAAACGGCACTATCCTCAAACGCAGAACACCAGAAGCTGCCTCTCATTATTTTCTTCCACGGAAGCGGTTTCGTCGTGGCCAGCGCCGCCAACACCATGTTCCACCACTTCTGCTCCGCCATGTCCGCAGCCGTCCCCGCCGTCGTCGCCTCCGTGGAGTATCGCCTCGCCCCGGAGCACCGTCTCCCGGCGGCTTACGACGACGCAGTGGAAGCCTTGGAGTTTGTCAGAAACAGCCAGGAAGAGTGGCTGACGAAACACGCCGACTTAGGTAACTGTTATATCATGGGGAACAGTGCGGGAGCAACAATCGCCTACTTCGCGGGCCTACGTGTGGCCGACACGTTGCGTGATCTTGAGCCGTTGAAGATCCAAGGGCTCATATTGCGGCAGGTGTTTTTTGGTGGGGTTCAGAGGTGTGGGTCCGAGGTGAGGTTAGAGAACGACGGGGTTTTGCCGTTGAGCGTAGCAGATTTGCTTTGGGAGTTGGCGCTGCCCGTTGGCGTTGACCGTGATCACGAGTATGCGAATCCGAGGGCTGAGAAGTGGGTTGGAAAATTGGGGAGAGTGAGGGATCTAGGGTGGAGGGTGTTGGTGAGTGGGAACGGTGGGGATCCGTTGATTGATCGTGAAAAAGAGTTGGTGGAGATGTTGAAAGAGAAGGGTGTGGAAGTAGATAGTGATTTTGAGGAAGAAGGGTGTCATGGGGTTGAATATGGTGATGAATCAAAGGCTACAAAATTCATTCAAGTAGTGAAACATTTCGTTTCCTCGAGTGATGTTTAG	978	0.5307	MSHQQQQSIDPYRHLDVVLNPNGTLTRSRHLPITPPNSDPTLPLLTKDITINPQNNTWLRLFLPQTALSSNAEHQKLPLIIFFHGSGFVVASAANTMFHHFCSAMSAAVPAVVASVEYRLAPEHRLPAAYDDAVEALEFVRNSQEEWLTKHADLGNCYIMGNSAGATIAYFAGLRVADTLRDLEPLKIQGLILRQVFFGGVQRCGSEVRLENDGVLPLSVADLLWELALPVGVDRDHEYANPRAEKWVGKLGRVRDLGWRVLVSGNGGDPLIDREKELVEMLKEKGVEVDSDFEEEGCHGVEYGDESKATKFIQVVKHFVSSSDV	325

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium5233g00001	325	SUPERFAMILY	alpha/beta-Hydrolases	19	319	IPR029058	-
	Vium5233g00001	325	Pfam	alpha/beta hydrolase fold	80	301	IPR013094	GO:0016787
	Vium5233g00001	325	Gene3D	alpha/beta hydrolase	12	324	IPR029058	-
	Vium5233g00001	325	PANTHER	ARYLACETAMIDE DEACETYLASE	27	301	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium5233g00001	Vium-Chr5233	4347	5574	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium5233g00001	3	311	Carbohydrate Esterase	AT5G16080	33.019	2.27e-49	166

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium5233g00001	-		-	gmx:100779813	508.834