Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium5228g00002 | ATGTCTATGAAGCATAAATTATCTGGTCACCTGAAATCTGTTTCTTCTGTTTCATGGAGTCCTAATGACCAAGAGCTCCTAACCTGTGGTGTGGAGGAGGCTGTTAGGCGGTGGGATGTATCTACTGGTAAGTGCCTGCAAGTTTATGAAAAAAATGGTCCTGGTCTCGTCTCCTGTGCTTGGTTTCCAAGTGGGAAATATATACTCTCTGGCCTCAGTGACAAGAGCATTTGTATGTGGGATTTAGATGGGAAAGAAGTGGACTCTTGGAAAGGACAGAGAACCCTTAAGATTTCTGACTTGGAAATAACGAGTGATGGGGAACACTTTTTGAGTATTTGCAAAGACAATGCAATACTGTTCTTCAACAAAGAAACTAAAGAAGAGAGATTTATTGAAGCAGAGGAGACAATAACTTCCTTCTCTTTGTCAAAGGATAGCAGATTCTTGTTGGCTAATCTTTTGAACCAAGAAATTCACCTCTGGAATTTAGAAGGTGATCCTAAACTTGTTGGCAAGTACAGAAGTCATAAACGCACCCGATTTATAGTCAGATCTTGCTTTGGTGGTCTTAAGCAATCTTTCATTGCTAGTGGTAGTGAGGATTCTCAGGTTTACATATGGCACAGGAACTCGGGGGATCTAGTAGAGGCATTGCCTGGTCATTCTGGAGCTGTTAACTGTGTGAGCTGGAATCCAGCAAACCCTCACATGTTAGCCTCGGCGAGTGATGACCGAACTATTCGGATATGGGGCCTAAAGCGCCTCAATGTAAAGTATCCCCCTAATCTACTACGCACCAATGGCGTCCATTACTGCAATGGTGGAGCCGAACTTAGGTGA | 843 | 0.433 | MSMKHKLSGHLKSVSSVSWSPNDQELLTCGVEEAVRRWDVSTGKCLQVYEKNGPGLVSCAWFPSGKYILSGLSDKSICMWDLDGKEVDSWKGQRTLKISDLEITSDGEHFLSICKDNAILFFNKETKEERFIEAEETITSFSLSKDSRFLLANLLNQEIHLWNLEGDPKLVGKYRSHKRTRFIVRSCFGGLKQSFIASGSEDSQVYIWHRNSGDLVEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKRLNVKYPPNLLRTNGVHYCNGGAELR | 280 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium5228g00002 | 280 | PANTHER | WD REPEAT PROTEIN 26-RELATED | 2 | 255 | - | - | |
Vium5228g00002 | 280 | SUPERFAMILY | WD40 repeat-like | 4 | 251 | IPR036322 | GO:0005515 | |
Vium5228g00002 | 280 | Gene3D | - | 1 | 217 | IPR015943 | GO:0005515 | |
Vium5228g00002 | 280 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 219 | 254 | - | - | |
Vium5228g00002 | 280 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 49 | 83 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 219 | 254 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 7 | 44 | - | - | |
Vium5228g00002 | 280 | PRINTS | G protein beta WD-40 repeat signature | 196 | 210 | IPR020472 | - | |
Vium5228g00002 | 280 | PRINTS | G protein beta WD-40 repeat signature | 68 | 82 | IPR020472 | - | |
Vium5228g00002 | 280 | PRINTS | G protein beta WD-40 repeat signature | 239 | 253 | IPR020472 | - | |
Vium5228g00002 | 280 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 7 | 48 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | SMART | WD40_4 | 212 | 252 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | SMART | WD40_4 | 125 | 163 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | SMART | WD40_4 | 167 | 209 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | SMART | WD40_4 | 83 | 123 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | SMART | WD40_4 | 4 | 39 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | SMART | WD40_4 | 42 | 81 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | Pfam | WD domain, G-beta repeat | 43 | 81 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | Pfam | WD domain, G-beta repeat | 170 | 208 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | Pfam | WD domain, G-beta repeat | 216 | 251 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | Pfam | WD domain, G-beta repeat | 4 | 39 | IPR001680 | GO:0005515 | |
Vium5228g00002 | 280 | Gene3D | - | 218 | 272 | IPR015943 | GO:0005515 | |
Vium5228g00002 | 280 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 68 | 82 | IPR019775 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium5228g00002 | Vium-Chr5228 | 498 | 1688 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium5228g00002 | 7 | 270 | Eukaryotic Initiation Factors Gene Family | AT2G46290 | 21.561 | 1.44e-09 | 56.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium5228g00002 | K22382 | - | gmx:100781300 | 528.865 |