Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5228g00002 ATGTCTATGAAGCATAAATTATCTGGTCACCTGAAATCTGTTTCTTCTGTTTCATGGAGTCCTAATGACCAAGAGCTCCTAACCTGTGGTGTGGAGGAGGCTGTTAGGCGGTGGGATGTATCTACTGGTAAGTGCCTGCAAGTTTATGAAAAAAATGGTCCTGGTCTCGTCTCCTGTGCTTGGTTTCCAAGTGGGAAATATATACTCTCTGGCCTCAGTGACAAGAGCATTTGTATGTGGGATTTAGATGGGAAAGAAGTGGACTCTTGGAAAGGACAGAGAACCCTTAAGATTTCTGACTTGGAAATAACGAGTGATGGGGAACACTTTTTGAGTATTTGCAAAGACAATGCAATACTGTTCTTCAACAAAGAAACTAAAGAAGAGAGATTTATTGAAGCAGAGGAGACAATAACTTCCTTCTCTTTGTCAAAGGATAGCAGATTCTTGTTGGCTAATCTTTTGAACCAAGAAATTCACCTCTGGAATTTAGAAGGTGATCCTAAACTTGTTGGCAAGTACAGAAGTCATAAACGCACCCGATTTATAGTCAGATCTTGCTTTGGTGGTCTTAAGCAATCTTTCATTGCTAGTGGTAGTGAGGATTCTCAGGTTTACATATGGCACAGGAACTCGGGGGATCTAGTAGAGGCATTGCCTGGTCATTCTGGAGCTGTTAACTGTGTGAGCTGGAATCCAGCAAACCCTCACATGTTAGCCTCGGCGAGTGATGACCGAACTATTCGGATATGGGGCCTAAAGCGCCTCAATGTAAAGTATCCCCCTAATCTACTACGCACCAATGGCGTCCATTACTGCAATGGTGGAGCCGAACTTAGGTGA 843 0.433 MSMKHKLSGHLKSVSSVSWSPNDQELLTCGVEEAVRRWDVSTGKCLQVYEKNGPGLVSCAWFPSGKYILSGLSDKSICMWDLDGKEVDSWKGQRTLKISDLEITSDGEHFLSICKDNAILFFNKETKEERFIEAEETITSFSLSKDSRFLLANLLNQEIHLWNLEGDPKLVGKYRSHKRTRFIVRSCFGGLKQSFIASGSEDSQVYIWHRNSGDLVEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLKRLNVKYPPNLLRTNGVHYCNGGAELR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5228g00002 280 PANTHER WD REPEAT PROTEIN 26-RELATED 2 255 - -
Vium5228g00002 280 SUPERFAMILY WD40 repeat-like 4 251 IPR036322 GO:0005515
Vium5228g00002 280 Gene3D - 1 217 IPR015943 GO:0005515
Vium5228g00002 280 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 254 - -
Vium5228g00002 280 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 83 IPR001680 GO:0005515
Vium5228g00002 280 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 254 IPR001680 GO:0005515
Vium5228g00002 280 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 7 44 - -
Vium5228g00002 280 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Vium5228g00002 280 PRINTS G protein beta WD-40 repeat signature 68 82 IPR020472 -
Vium5228g00002 280 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Vium5228g00002 280 ProSiteProfiles Trp-Asp (WD) repeats profile. 7 48 IPR001680 GO:0005515
Vium5228g00002 280 SMART WD40_4 212 252 IPR001680 GO:0005515
Vium5228g00002 280 SMART WD40_4 125 163 IPR001680 GO:0005515
Vium5228g00002 280 SMART WD40_4 167 209 IPR001680 GO:0005515
Vium5228g00002 280 SMART WD40_4 83 123 IPR001680 GO:0005515
Vium5228g00002 280 SMART WD40_4 4 39 IPR001680 GO:0005515
Vium5228g00002 280 SMART WD40_4 42 81 IPR001680 GO:0005515
Vium5228g00002 280 Pfam WD domain, G-beta repeat 43 81 IPR001680 GO:0005515
Vium5228g00002 280 Pfam WD domain, G-beta repeat 170 208 IPR001680 GO:0005515
Vium5228g00002 280 Pfam WD domain, G-beta repeat 216 251 IPR001680 GO:0005515
Vium5228g00002 280 Pfam WD domain, G-beta repeat 4 39 IPR001680 GO:0005515
Vium5228g00002 280 Gene3D - 218 272 IPR015943 GO:0005515
Vium5228g00002 280 ProSitePatterns Trp-Asp (WD) repeats signature. 68 82 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5228g00002 Vium-Chr5228 498 1688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5228g00002 7 270 Eukaryotic Initiation Factors Gene Family AT2G46290 21.561 1.44e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5228g00002 K22382 - gmx:100781300 528.865