Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5224g00007 ATGCAACAATCGAACGGTTCCGATTCCTCGTTGCAGTCGCAATCCGCGGAGCATGTTCCGCGGCAGCCGGCAGGGTCTCCGGCGGTGGCGCGGCCGCAGCAGTGGCTCCCGATGCAGTATCCAGCGGCCATGGTAATGCCGCACCACATGCTGCCTCCGCAGCACTACGCGCCGCCGCCGTACATGCCTTTCCATCACCACCAGTACGGGCCGCCGCACGTCCCGCATCAGCAGCATCAGAACGGATCCAGCGGCGAGAACAAAACCGTCTGGATCGGCGATTTGCATCACTGGATGGACGAGAACTATCTCCATCGCTGTTTCGCCTCCACCGGCGAGATTTCCTCTATCAAGGTCATTCGCAATAAGCAAACTGGCCTATCAGAGGGTTACGGATTTGTGGAGTTCTATTCACGTGTCACTGCCGAGAAAGTTTTGCAAAACTATGCTGGAATGTTGATGCCCAATACAGAGCAAGCATTCCGTCTAAACTGGGCATCATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCATGAAACTTTTGCTAGTGTGTTTCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGCGATGACAGTGAAAGATCCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCCAGCAGGCCTATGCGCATTGGTGCTGCAACACCAAGGAAATCATCTGGCCACCCACAGGGAGGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACCAACACAACAATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAGGACCTCAGGCAGCCATTCTCCCAGTACGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGATGTGGTTTTGTGCAGTTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAACGGGACAACAATTGGAAAGCAGACTGTCCGACTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAACCCCTGGACAGGGGCATATTATGGGGCCCCTATTTATGATGGTTATGGATACGCATTGCCTCCTCGTCATGATCCCAGCATATATACTGCTGCGTATGGGGCTTACCCTCTTTATGGTGCCCACCAGCAACAAGTAAGCTGA 1251 0.5036 MQQSNGSDSSLQSQSAEHVPRQPAGSPAVARPQQWLPMQYPAAMVMPHHMLPPQHYAPPPYMPFHHHQYGPPHVPHQQHQNGSSGENKTVWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSRVTAEKVLQNYAGMLMPNTEQAFRLNWASFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDSERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHPQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYTAAYGAYPLYGAHQQQVS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5224g00007 416 FunFam Polyadenylate-binding protein RBP47B 169 271 - -
Vium5224g00007 416 SMART rrm1_1 89 164 IPR000504 GO:0003723
Vium5224g00007 416 SMART rrm1_1 287 354 IPR000504 GO:0003723
Vium5224g00007 416 SMART rrm1_1 182 256 IPR000504 GO:0003723
Vium5224g00007 416 CDD RRM3_NGR1_NAM8_like 285 356 - -
Vium5224g00007 416 MobiDBLite consensus disorder prediction 1 20 - -
Vium5224g00007 416 Gene3D - 263 364 IPR012677 -
Vium5224g00007 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
Vium5224g00007 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Vium5224g00007 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 78 362 - -
Vium5224g00007 416 SUPERFAMILY RNA-binding domain, RBD 180 357 IPR035979 GO:0003676
Vium5224g00007 416 FunFam Polyadenylate-binding protein RBP47B 87 167 - -
Vium5224g00007 416 CDD RRM2_SECp43_like 180 259 - -
Vium5224g00007 416 MobiDBLite consensus disorder prediction 264 292 - -
Vium5224g00007 416 CDD RRM1_SECp43_like 89 169 - -
Vium5224g00007 416 MobiDBLite consensus disorder prediction 256 294 - -
Vium5224g00007 416 FunFam Polyadenylate-binding protein RBP47 272 388 - -
Vium5224g00007 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 358 IPR000504 GO:0003723
Vium5224g00007 416 Gene3D - 180 256 IPR012677 -
Vium5224g00007 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 351 IPR000504 GO:0003723
Vium5224g00007 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 157 IPR000504 GO:0003723
Vium5224g00007 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 252 IPR000504 GO:0003723
Vium5224g00007 416 MobiDBLite consensus disorder prediction 1 30 - -
Vium5224g00007 416 Gene3D - 87 167 IPR012677 -
Vium5224g00007 416 MobiDBLite consensus disorder prediction 62 87 - -
Vium5224g00007 416 SUPERFAMILY RNA-binding domain, RBD 49 166 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5224g00007 Vium-Chr5224 34926 39326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5224g00007 61 366 Eukaryotic Initiation Factors Gene Family AT4G34110 28.662 3.96e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5224g00007 - - gmx:100819523 757.288