Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5224g00006 ATGACTAAAGCAACTCAATTCCAAAGTCTTTACTGCCTTCTTCCGTCCCCTTTCTTTCCAAATAAACATGAAATTAGAGGGAGAGAAAGACTAAGGAGTTATGAAAAAGGGCCTAAGTTNTTCCTAGAGTCTCCAGCAGGAGTTGGATTTTCATATTCAAACACTTCTTCAGACTACTCAAACACGGGAGACAAGAGCACAGCAATGGACTCTTACACTTTTCTTGTAAAGTGGCTTCACAGATTTCCACACTACAAATCTCGAGACCTGTTCATCACAGGAGAAAGCTATGCCGGACATTATGTCCCTCAGCTAGCTCACACTATTCTCACTAATAATAAGCTTACAAATCTTACAGTCATTAACCTCAAAGGCATTGCGATTGGGAATGGTTGGATAGATGATAATATATGTGCAAAGGGAATGTATGACTATTTCTGGACACATGCTTTGAACTCAGATGAAACCCATGAAGGAATTGAAAGGCATTGTGACTTTGAGAGTGGGAACATGACAAGTGAATGCAACGAATACCAAATAAGAGGGGATAATGAGATTGGAGTGATTGACATTTATGACATATATGGTCCCCCTTGCGATCCAACTGCAACAAAACCTGATCAAAGTTCTGCCACTTACTCTGACAGCAATTTCGACCCTTGTTCTGACGAATATACTAAATCCTACTTGAATCTGGCTCAAGTGCAAGAGGCTCTTCATGCTAAAGTCTCAGAATGGTCTCCTTGCAGTGGAGTGGGATGGACAGACAGCCCAGCAACAATTCTACCCACTATAAATCGGATAATATCAAGTGGCATAAGGACCTGGATATATAGTGGTGATACAGATGGGCGCGTTCCCATAACATCATCTAGGTATTCAGTAAATGCCTTGAAACTTCCAGTGGAGACAACATGGCGTCCCTGGTATTCTGGAGATGAGGTTGGAGGATACTTGATTGGGTACAAAGGACTCACCCTCATCACTGTAAGAGGAGCTGGGCACATGGTTCCAAGTTACCAACCAAAGCGAGCGTTAACCATGATCTCGTTTTTTCTTCGGGGAGAACTTCCTCCCGAATTCAACTCTTAG 1092 0.424 MTKATQFQSLYCLLPSPFFPNKHEIRGRERLRSYEKGPKXFLESPAGVGFSYSNTSSDYSNTGDKSTAMDSYTFLVKWLHRFPHYKSRDLFITGESYAGHYVPQLAHTILTNNKLTNLTVINLKGIAIGNGWIDDNICAKGMYDYFWTHALNSDETHEGIERHCDFESGNMTSECNEYQIRGDNEIGVIDIYDIYGPPCDPTATKPDQSSATYSDSNFDPCSDEYTKSYLNLAQVQEALHAKVSEWSPCSGVGWTDSPATILPTINRIISSGIRTWIYSGDTDGRVPITSSRYSVNALKLPVETTWRPWYSGDEVGGYLIGYKGLTLITVRGAGHMVPSYQPKRALTMISFFLRGELPPEFNS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5224g00006 363 FunFam Carboxypeptidase 39 201 - -
Vium5224g00006 363 ProSitePatterns Serine carboxypeptidases, serine active site. 92 99 IPR018202 GO:0004185
Vium5224g00006 363 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 41 342 IPR001563 GO:0004185|GO:0006508
Vium5224g00006 363 ProSitePatterns Serine carboxypeptidases, histidine active site. 325 342 IPR033124 GO:0004185
Vium5224g00006 363 Gene3D - 261 355 - -
Vium5224g00006 363 PRINTS Carboxypeptidase C serine protease (S10) family signature 78 103 IPR001563 GO:0004185|GO:0006508
Vium5224g00006 363 PRINTS Carboxypeptidase C serine protease (S10) family signature 325 338 IPR001563 GO:0004185|GO:0006508
Vium5224g00006 363 PRINTS Carboxypeptidase C serine protease (S10) family signature 42 52 IPR001563 GO:0004185|GO:0006508
Vium5224g00006 363 Gene3D alpha/beta hydrolase 38 201 IPR029058 -
Vium5224g00006 363 Pfam Serine carboxypeptidase 41 354 IPR001563 GO:0004185|GO:0006508
Vium5224g00006 363 FunFam Carboxypeptidase 261 355 - -
Vium5224g00006 363 SUPERFAMILY alpha/beta-Hydrolases 40 356 IPR029058 -
Vium5224g00006 363 Gene3D - 221 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5224g00006 Vium-Chr5224 31410 34214 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5224g00006 226 356 Calmodulin-binding Proteins AT2G22960 28.676 1.03e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5224g00006 K16297 - gmx:100820473 582.793