Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5224g00005 ATGTTGTCAAGAAAAACTGTTGTGTGGTTGATGTTTTTGTGTTGGTGGCTGTTTGGCATATCATGCGAGGGGAACAAACAAGGGGAATATCTGTACAGGTTAATTCGATCAAAGAGGAGCGATGAGAAAGGGATGTCATCAGAAGAAGCTTCAGTGGGCAGAAATGGTGGTGATGAAGATTTATGGAAGGTTGAAGAAGAAAGGGTGTTGATGGAAGGTGACAGAGTGAAGGGTTTACCAGGAGAACCAGAAGGTGTAGATTTTGATCAGTATGGTGGCTATGTAACTGTGGATGCCAAAAGAGGAAGAAGATTGTTCTATTACTTTGTAGAGTCACCTCAAAATGCTTCTAACAAGCCCCTCCTTCTATGGCTCAATGGAGGACCTGGTTGCTCTTCCCTTGGATATGGAGCCATGCAAGAATTGGGACCTTTTAGAGTGAACAGTGATGGAAGAACACTTCATAAAAACGAATATGCATGGCACAATGTGGCAAATGTTATTTTCCTAGAGTCTCCAGCAGGAGTTGGATTTTCATATTCAAACACTTCTTCAGACTACTCAAACACGGGAGACAAGAGCACAGCAATGGACTCTTACACTTTTCTTGTAAAGTGGCTTCACAGATTTCCACACTACAAATCTCGAGACCTGTTCATCACAGGAGAAAGCTATGCCGGACATTATGTCCCTCAGCTAGCTCACACTATTCTCACTAATAATAAGCTTACAAATCTTACAGTCATTAACCTCAAAGGCATTGCGATTGGGAATGGTTGGATAGATGATAATATATGTGCAAAGGGAATGTATGACTATTTCTGGACACATGCTTTGAACTCAGATGAAACCCATGAAGGAATTGAAAGGCATTGTGACTTTGAGAGTGGGAACATGACAAGTGAATGCAACGAATACCAAATAAGAGGGGATAATGAGATTGGAGTGATTGACATTTATGACATATATGGTCCCCCTTGCGATCCAACTGCAACAAAACCTGATCAAAGTTCTGCCACTTACTCTGACAGCAATTTCGACCCTTGTTCTGACGAATATACTAAATCCTACTTGAATCTGGCTCAAGTGCAAGAGGCTCTTCATGCTAAAGTCTCAGAATGGTCTCCTTGCAGTGGAGTGGGATGGACAGACAGCCCAGCAACAATTCTACCCACTATAAATCGGATAATATCAAGTGGCATAAGGACCTGGATATATAGTGGTGATACAGATGGGCGCGTTCCCATAACATCATCTAGGTATTCAGTAAATGCCTTGAAACTTCCAGTGGAGACAACATGGCGTCCCTGGTATTCTGGAGATGAGGTTGGAGGATACTTGATTGGGTACAAAGGACTCACCCTCATCACTGTAAGAGGAGCTGGGCACATGGTTCCAAGTTACCAACCAAAGCGAGCGTTAACCATGATCTCGTTTTTTCTTCGGGGAGAACTTCCTCCCGAATTCAACTCTTAG 1476 0.4282 MLSRKTVVWLMFLCWWLFGISCEGNKQGEYLYRLIRSKRSDEKGMSSEEASVGRNGGDEDLWKVEEERVLMEGDRVKGLPGEPEGVDFDQYGGYVTVDAKRGRRLFYYFVESPQNASNKPLLLWLNGGPGCSSLGYGAMQELGPFRVNSDGRTLHKNEYAWHNVANVIFLESPAGVGFSYSNTSSDYSNTGDKSTAMDSYTFLVKWLHRFPHYKSRDLFITGESYAGHYVPQLAHTILTNNKLTNLTVINLKGIAIGNGWIDDNICAKGMYDYFWTHALNSDETHEGIERHCDFESGNMTSECNEYQIRGDNEIGVIDIYDIYGPPCDPTATKPDQSSATYSDSNFDPCSDEYTKSYLNLAQVQEALHAKVSEWSPCSGVGWTDSPATILPTINRIISSGIRTWIYSGDTDGRVPITSSRYSVNALKLPVETTWRPWYSGDEVGGYLIGYKGLTLITVRGAGHMVPSYQPKRALTMISFFLRGELPPEFNS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5224g00005 491 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Vium5224g00005 491 FunFam Carboxypeptidase 389 483 - -
Vium5224g00005 491 Pfam Serine carboxypeptidase 80 482 IPR001563 GO:0004185|GO:0006508
Vium5224g00005 491 ProSitePatterns Serine carboxypeptidases, serine active site. 220 227 IPR018202 GO:0004185
Vium5224g00005 491 SUPERFAMILY alpha/beta-Hydrolases 76 484 IPR029058 -
Vium5224g00005 491 FunFam Carboxypeptidase 347 485 - -
Vium5224g00005 491 Gene3D - 389 483 - -
Vium5224g00005 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 206 231 IPR001563 GO:0004185|GO:0006508
Vium5224g00005 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 453 466 IPR001563 GO:0004185|GO:0006508
Vium5224g00005 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 169 IPR001563 GO:0004185|GO:0006508
Vium5224g00005 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 180 IPR001563 GO:0004185|GO:0006508
Vium5224g00005 491 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 75 470 IPR001563 GO:0004185|GO:0006508
Vium5224g00005 491 FunFam Carboxypeptidase 70 329 - -
Vium5224g00005 491 Gene3D - 349 380 - -
Vium5224g00005 491 Gene3D alpha/beta hydrolase 71 329 IPR029058 -
Vium5224g00005 491 ProSitePatterns Serine carboxypeptidases, histidine active site. 453 470 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5224g00005 Vium-Chr5224 26241 31647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5224g00005 354 484 Calmodulin-binding Proteins AT2G22960 28.676 1.82e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5224g00005 K16297 - gmx:100818983 811.986