Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5220g00002 ATGGCGTTTTGGTTTGGATTCCTTCTTCCGGTTCTTCTCCTTCGTTTGGATTTGGTGGAATCTCACGACGGAGCAACTTTGTTGGAGATGAAGAAGTCGTTGAGGGATGTGGATAACGTTCTGTTTGACTGGACTGACACACCTTCTTCAGATTATTGTGTCTGGAGAGGGGTTACTTGTGAAAATGTCACTTTCAATGTGGTTGCACTGAATCTTTCAGGATTGAATCTTGAAGGCGAGATTTCACCTGCATTAGGGAGGCTTAGCAGATTGGTCTCCATTGATCTCAAGGAAAACCGTTTATCTGGGCAGATACCTGATGAGCTTGGTGACTGTTCCTCTTTGAAAAACGTAGATTTCTCTTTTAATGAGATTCGGGGAGATATACCGTTTTCAATTTCGAAGATGAAACAACTGGAAAATCTAATCTTGAAAAATAATCAGCTCATTGGGCCAATTCCTTCAACTCTCTCTCAGGTTCCTAACTTGAAGATTCTAGACCTGGCACAGAATAATCTCAGTGGTGAGATACCAAGACTTATATACTGGAATGAAGTTTTGCAATATATTGGCTTGCGAGGTAACAATTTGTCGGGTTCACTTTCTCCAGACATATGCCAGTTAACTGGATTGTGGTATTTTGACGTGAGAAACAATAGCTTGACAGGCAGTATTCCTGAAAACATAGGCAATTGTACTGCTTTCGAGATCTTGGATTTATCTTACAACAAGCTATCTGGAGAGATACCATTCAATATTGGTTTCCTACAAGTAGCAACTCTGTCATTGCAAGGCAATAAACTCTCAGGTTATATTCCATCAGTTATCGGTCTGATGCAAGCCATTACTGTCTTAGATTTGAGCTGTAACATGCTAAGTGGGCCAATCCCTCCTATATTGGGAAATTTGACCTACACAGAAAAACTGTATTTGTATGGAAACAAGCTGACTGGTCTCATCCCCCCAGAGCTCGGCAACATGACAAAGCTTCACTATTTGGAATTGAATGATAACCTTTTAAGTGGACCAATCCCGCCTGAGCTTGGAAAGCTTACTGATCTGTTTGACTTAAATGTTGCCAATAACAACCTTGAGGGTCCAATTCCCGAGAATCTCGGCTCATGTAAAAACCTCAACAGCCTCAATGTGCATGGGAATAAGATGAGTGGAACAATTCCCTCAGTTTTTCAAAGCTTGGAGAGTATGACCTATCTTGACCTTTCAAATAATAAACTCTCTGGCTTGATCCCTGAAGAACTTAGTCAGCTTCAGAACATGATATCTTTGAGACTAGAAATGAACAAATTATCCGGGGATTTGTCTTCACTTGTAAATTGCCTTAGTCTTTCTTTGATTAATGTATCTTACAACAATTTAGTTGGTGTTATTCCCACAAGCAACAATTTTTCCAGGTTTACTCCTGATAGTTTCATTGGAAACCCTGGTCTCTGTGGCTATTGGCTGGATTCATCTTGTCAAGGGTCTCACCCTACCGAACGAGTTAACCTGTCTAAGGCAGCTATCCTAGGAATTGCTCTAGGTGCCCTTGTGATTCTTTTCATGGTGCTCTTTGCAGCTTGCCGACAACACAATCCAGCTCCTTTCCCTGAAGGATCTTTTGACAAACCAGTTAATTACTCACCTCCGAAGCTAGTGATACTTCACATGAATATGGCACTTCATGTATATGATGATATAATGAGAATGACTGAAAACCTAAGTGAGAAGTATATAATTGGGTATGGTGCATCAAGTACAGTTTACAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCTATCAAGAAGCTGTATTCCCACTACCCCCAATGCTTGAAAGAGTTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACAGGAATCTGGTCAGTCTCCAAGGCTACTCTCTGTCTCCATTTGGAAACCTCCTCTTTTATGATTACATGGAAAATGGAAGTCTGTGGGATCTTTTACATGGACCTACCAAGAAGAAAAAACTTGATTGGGATGTTCGTCTAAAAATAGCACTTGGATCAGCACAAGGGCTCGCTTATCTACACCATGATTGCTGTCCACGTATCATTCACAGGGATGTAAAATCATCTAATATATTACTAGACAAAGACTTGGAGCCCCATCTCACCGATTTTGGCATTGCAAAGAGTCTATGCCCTTCTAAGTCCCACACTTCCACTTACATAATGGGCACCATTGGCTACATAGACCCCGAGTATGCTAGAACTTCTCGTCTCACTGAGAAGTCTGATGTGTATAGCTACGGTATTGTATTACTTGAGCTTCTAACTGGGAGGAAAGCTGTGGAAAACGAAACAAACCTTCATCATCTGATTTTATCCAAGACAGCTAATGATGCTGTAATGGAAACCGTTGACCCAGATATCAGTACCACATGCAAGGACATGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCCCTTTTGTGCACCAAGAAGCAACCAGTGGATAGACCCACAATGCACGAGGTGACCCGCGTTCTGGGGAGTCTAGTGCCACCAAAAGAATCAGTACCAATGCAAGTACTTTTACCTCATTCACAGCCATCTGCAAAAATGCAATCCTACAAGGATGAATACGCCAATCTTAAAGCCCCACACCTGGTCAACTGTCCCTCCATCAGCACCTCTGATGCGCAACTCTTCCTCAAATTTGGAGAAGTAATATCTCAAAACAGCGAGTGA 2718 0.4176 MAFWFGFLLPVLLLRLDLVESHDGATLLEMKKSLRDVDNVLFDWTDTPSSDYCVWRGVTCENVTFNVVALNLSGLNLEGEISPALGRLSRLVSIDLKENRLSGQIPDELGDCSSLKNVDFSFNEIRGDIPFSISKMKQLENLILKNNQLIGPIPSTLSQVPNLKILDLAQNNLSGEIPRLIYWNEVLQYIGLRGNNLSGSLSPDICQLTGLWYFDVRNNSLTGSIPENIGNCTAFEILDLSYNKLSGEIPFNIGFLQVATLSLQGNKLSGYIPSVIGLMQAITVLDLSCNMLSGPIPPILGNLTYTEKLYLYGNKLTGLIPPELGNMTKLHYLELNDNLLSGPIPPELGKLTDLFDLNVANNNLEGPIPENLGSCKNLNSLNVHGNKMSGTIPSVFQSLESMTYLDLSNNKLSGLIPEELSQLQNMISLRLEMNKLSGDLSSLVNCLSLSLINVSYNNLVGVIPTSNNFSRFTPDSFIGNPGLCGYWLDSSCQGSHPTERVNLSKAAILGIALGALVILFMVLFAACRQHNPAPFPEGSFDKPVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQCLKEFETELETVGSIKHRNLVSLQGYSLSPFGNLLFYDYMENGSLWDLLHGPTKKKKLDWDVRLKIALGSAQGLAYLHHDCCPRIIHRDVKSSNILLDKDLEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVENETNLHHLILSKTANDAVMETVDPDISTTCKDMGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLGSLVPPKESVPMQVLLPHSQPSAKMQSYKDEYANLKAPHLVNCPSISTSDAQLFLKFGEVISQNSE 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5220g00002 905 Pfam Leucine rich repeat 377 436 IPR001611 GO:0005515
Vium5220g00002 905 Gene3D Transferase(Phosphotransferase) domain 1 649 850 - -
Vium5220g00002 905 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 308 838 - -
Vium5220g00002 905 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 20 184 - -
Vium5220g00002 905 Pfam Protein kinase domain 576 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5220g00002 905 SMART LRR_typ_2 327 351 IPR003591 -
Vium5220g00002 905 SMART LRR_typ_2 160 184 IPR003591 -
Vium5220g00002 905 SMART LRR_typ_2 208 232 IPR003591 -
Vium5220g00002 905 SMART LRR_typ_2 399 422 IPR003591 -
Vium5220g00002 905 SMART LRR_typ_2 88 112 IPR003591 -
Vium5220g00002 905 SUPERFAMILY L domain-like 256 486 - -
Vium5220g00002 905 ProSitePatterns Protein kinases ATP-binding region signature. 579 602 IPR017441 GO:0005524
Vium5220g00002 905 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 649 849 - -
Vium5220g00002 905 ProSiteProfiles Protein kinase domain profile. 573 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5220g00002 905 Gene3D Ribonuclease Inhibitor 255 500 IPR032675 -
Vium5220g00002 905 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 256 347 - -
Vium5220g00002 905 SUPERFAMILY Protein kinase-like (PK-like) 550 839 IPR011009 -
Vium5220g00002 905 SMART serkin_6 573 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5220g00002 905 Gene3D Phosphorylase Kinase; domain 1 546 648 - -
Vium5220g00002 905 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 185 255 - -
Vium5220g00002 905 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 369 492 - -
Vium5220g00002 905 SUPERFAMILY L domain-like 24 256 - -
Vium5220g00002 905 Gene3D Ribonuclease Inhibitor 184 254 IPR032675 -
Vium5220g00002 905 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Vium5220g00002 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672|GO:0006468
Vium5220g00002 905 Gene3D Ribonuclease Inhibitor 20 183 IPR032675 -
Vium5220g00002 905 ProSiteProfiles Leucine-rich repeat profile. 162 184 IPR001611 GO:0005515
Vium5220g00002 905 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 544 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5220g00002 Vium-Chr5220 16475 23943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5220g00002 21 904 Receptor kinase-like Gene Family AT5G62230 59.516 0.0 1085
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vium5220g00002 Pkinase 4.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5220g00002 K20718 - qsa:O6P43_015836 1360.13