Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5213g00004 ATGGGTATCTGCATATCCTCTGAATCTTCAGCGATTCATGGAGCGCCCGAAGAAGCTCGTGATGAAAATGTGTTAGTGTTTGAAGCAACCAAGCTTCTAAGGGGACTTTCCTCTGCTTACTCTAAACAAGGTACCAAAGGGCTCAACCAAGATGCTGCAACACTTTGTCAGGTTTATGGGACGACAAACGCAGCATTCTGTGGAGTTTTTGATGGGCATGGAAGGAATGGTCACATAGTGAGCAAAATAGTGAACAGCCGTTTGTGTTCATTCATAGTGGACCAAAAAAAAGTGCATGCAAAGATTGAAAAGAAGATCATGGTAAGGCATGCGGAGACAGTTGAAGACGACTCACAAGCTCTACTAAACAAGAATTTTCAAGAATGGAAAGAAGCCATTGTTGATGGTTTCAGGGTGATGGACAAGGAGGTGAAGCTACAAGAGAATCTGGACTGCTCTTGCAGTGGAACTACGGCTGTAGTTGTCATAAGACAGGGTGAAGATCTTGTCATAGCAAACCTTGGTGACTCGAGAGCAATCTTGGGGACAATCTCTGACGGTGAAATCATGGCCATTCAATTGACCACGGATATGAAACCTGGATTACCATGCGAAGCAGCACGAATAAAAAGTTGCAATGGCCGTGTATTTGCCCTGAAGGAAGAACCACACATCCAGCGAGTGTGGTTACCAGATGAGAACTCTCCAGGTCTGGCCATGTCTAGGGCTTTTGGAGATTTCATGCTCAAAGACCACGGCATCATTGCCATCCCTGACATTTCGCATCGCACTCTAACATCTAGCGACCAATTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTGCTAAGCAACGAGGAGGTTTCCTCAATTGTGTGGGAAGCAGACACTGAAAATGAAGCAGCAAGGGCTGTTGTGGAAGCAGCAGCTTTAGCATGGAAAAGCAAGTATCCTTCTTCTAAGTTAGATGACTGCACTGCCGTTTGCCTCTTCCTACAGAAGAAGCCACAGTTTCTACCCGTCAAATGTGGAAATCCCTCATAA 1044 0.455 MGICISSESSAIHGAPEEARDENVLVFEATKLLRGLSSAYSKQGTKGLNQDAATLCQVYGTTNAAFCGVFDGHGRNGHIVSKIVNSRLCSFIVDQKKVHAKIEKKIMVRHAETVEDDSQALLNKNFQEWKEAIVDGFRVMDKEVKLQENLDCSCSGTTAVVVIRQGEDLVIANLGDSRAILGTISDGEIMAIQLTTDMKPGLPCEAARIKSCNGRVFALKEEPHIQRVWLPDENSPGLAMSRAFGDFMLKDHGIIAIPDISHRTLTSSDQFIVLASDGVWDVLSNEEVSSIVWEADTENEAARAVVEAAALAWKSKYPSSKLDDCTAVCLFLQKKPQFLPVKCGNPS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5213g00004 347 CDD PP2Cc 37 299 IPR001932 -
Vium5213g00004 347 Pfam Protein phosphatase 2C 102 309 IPR001932 -
Vium5213g00004 347 Gene3D - 27 335 IPR036457 -
Vium5213g00004 347 PANTHER PROTEIN PHOSPHATASE 37 330 IPR015655 GO:0004722|GO:0006470
Vium5213g00004 347 SMART PP2C_4 29 330 IPR001932 -
Vium5213g00004 347 ProSiteProfiles PPM-type phosphatase domain profile. 36 332 IPR001932 -
Vium5213g00004 347 SUPERFAMILY PP2C-like 32 333 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5213g00004 Vium-Chr5213 28950 30852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5213g00004 1 337 PP2C-type Phosphatase Gene Family AT5G26010 50.144 8.05e-103 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5213g00004 - - gmx:100795893 553.132