Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5211g00005 ATGGGTTTATTTTTGCAGCCCATTAAGGAAGGTGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCACCCATGAGGTATGTGGACATTGGGATTCCTGCCAAACACAACATTGGGTGTCTCTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGTCCTAGCCTCAAATGGGATGTTATGGTGGACTTGTTCTTCTGTAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCTGCTGGTGATTATGCCATCACTGACTATAATCCTGGTGCTATTGCTGCTGATGGCCAATGGCCTGGTACAATTGATCAATCGTGGACAGATGTAGTTCCACAACCTATTCCAGCTGTACTTGGCGTCAACTGGGGAGCCCCTACATCATTAATTTGTTTTGATAAACACGAAACTCTCACAACCATTGCTTTATTTGTTTAA 468 0.453 MGLFLQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPAKHNIGCLFWLLARMVLQMRGTIRPSLKWDVMVDLFFCREPEEAKQQEEEEAPAGDYAITDYNPGAIAADGQWPGTIDQSWTDVVPQPIPAVLGVNWGAPTSLICFDKHETLTTIALFV 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5211g00005 155 PANTHER 40S RIBOSOMAL PROTEIN SA 6 137 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vium5211g00005 155 SUPERFAMILY Ribosomal protein S2 6 70 IPR023591 -
Vium5211g00005 155 Gene3D - 4 90 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5211g00005 6 131 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 64.662 7.15e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5211g00005 K02998 - gmx:100805318 243.047