Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5211g00004 ATGAGAGAGATCAAGGAGCACAGCACAATGTGCAGCAGGAGTAGTAGCAGCTTCTTCTTCAGCCTCTTCCTCCTCATTGGACCAATCTTTTCCCTTTCTTCTTCAACTTCCGTCAACAGAAGAATCCTCCACCAACCCTTTCTGCCTGAAGGGGGTTCCCCACCTCCCTCTGTTCCCCCAAGCCCTCCTCCACAGCCATCTCCTTCACCTTCACCTCCAAACCCAAAGTACCCATTTTCCACCACACCCACCACCAATGCTTCCACACCCTTCTTCCCCACATACCCTTCTCCCCCACCTCCTCCCTCTCCTTCAGCCTTTGCTTCTTTCCCTGCTAACATATCCTCCCTCATCCTTCCCCAATCCTCAAAGTCCAAATCTTCCTCAAAAAAACTCGTCGCCGTCGCCATCTCCGCCGTCGCATGCGCCCTCGCAGTTGTCGCCCTCTCAGCCTTCGTCTACTGTCGCCGCCGACGTCAAAGCTACTCCGCTGACGAGAAAACACTCAGATCCGACAGCAGCATCCGCCTCTTCCCCCGTGAAGCTTCTGTTGCCACTGGCGGGGGCCGCAAACCGAGAAACACCTCCTCTACCAGCTCGGAGTTTCTCTACCTTGGCACCATTGTTAACTCCCGTGGCGGCGGTGTCGATGAGCTCTCTGAGCCGCACGTTGCTGCGTTGAACCCCCGTAAAATGGACTCGCCGGAGCTTCAGCCGCTGCCACCGCTGGCGAGACAGGCTTCCAGGCTTAGAGAGGAAACGGCGGCGACGGTGGAGGATGATGAAGAGGAGTTCTACTCGCCGAGAGGGTCGTTGAATGGAAGAGAAGGCTCCACCGGAACCGGATCGGGTTCTCGGCGAGTTTTCTCTGCCATTGCCGGAGAAAATTTAGTTGGTCGTAGCAGCAGTGAGTCTACCAGTTCATCTTACTCTTCTTCCTCTTCTGCTTCCCCGGATCGCTCTCATTCCATTAGTCTCTCTCCTCCTGTGAGCATAAGTCCCAGAAGATCACAACCCAAGTCGCCTGAAAATACCGTAGTACACCATTCTCCACCGCCACCACCAGCGGCGATTAGAAGATCGCCGTCCTTGTCCACACTGTCGTCGCCTTCGCCGGGTTTCGGGCAGCACATGCCGTCGTCGTCTTCAATGTCGTCGACGCCGGAGCGAAGGGAGTGTCAGTCGCCATCGCTGTCTCCGCTTTCTCTGTCGCCGAGGAAAAACCTAAACCCAAACCCAGGTGGTGAATCATCCCCAGGACTTGTTTTACTTGAAAAGACGCAATCTTTTGGCTCGTCTAAGTCCAAAAGCGACATTGGGTCGCCGAGATTGTCCAATGCTTCTTCCATTGGGAAGTCCTCGGCGTTTTCTTTGCCGTCGCCGGATAAAGGGATGAACTTGCATCACGGGTTGGATCAGTCTCCGACCATATCCGATGTTTCAGATCGGTTTAGACACTCTCCTCTGTCATCATTACATTTGTCACCGACATTACTTTCATCGCCGGAGAGGGAGTTGAGCCCTCCGTCTCAGCCACATCCACAGCCACAGCCAGAGCCACAGCCTCAGCCTCAGCCTCAGCCTCAGCATCAGCCTCTGCCTCAACCTCAACCTCAATCTCAACCTCAACCTCAACTGCCACCTTCACGCAAACACTGGGAGATTCCTGACTTATTGACACCAATCGGCGAAACACCGATGTTTTCAGCTCCTCAGAGGAAACAATGGGAAATTCCGGTTCTTTCGGTACCAATTGCTCCATCGAGTAGTAGTGTTTTAGCCCCTGCTCCACCACCGCCGCCGCCACCACCTCCGCCAGTTCCGCGGCAACGTAAGCAGTGGGAGATGCCAGTGCCTTCTCCCGTGACGCCAGTGGGTCAACAGGTTTCGAAGCCGCCTGCACTGACGCCTCCTTCCAGGCCTTTTGTGTTGCAAACCCCAAATACAATGGTTTCTCCGGTGGAGTTGCCACCTGTTAGTTCCCAGAATTTCGAGGAGAGCTCTGAGGAGTCATCTAAACCTAAGTTGAAGCCTTTGCATTGGGACAAAGTGAGGGCAAGCTCTGATCGTGAGATGGTGTGGGATCAGTTGAGGTCCAGCTCTTTTAAGTTGAACGAGGAGATGATCGAAACTTTGTTTGTAGTAAATACGCCAAACCCAAAACCTAAGGACACAACTCCTCGCTCGGTTCTTGCCCCGCAAAATCAAGAGGATAGGGTGCTGGATCCTAAAAAGTCCCAGAACATTGCTATCTTGTTAAGAGCACTTAATGTGACTATAGAAGAAGTGTGTGAATCACTGTTAGAAGGTATCACTGATACACTTGGAACCGAACTGCTTGAAAGCCTGTTGAAAATGGCACCAAGCAAGGAGGAAGAACGGAAACTGAAGGAACATAAAGACGATTCTCCAACCAAGCTTGGTCCTGCTGAGAAATTTTTGAAGGCAGTGCTTGATGTACCTTTTGCATTTAAAAGGGTGGAAGCAATGCTTTACATAGTCAATTTTGAGTCCGAAGTGGAGTATCTTAGGAAATCCTTTCAAACTTTGGAGGCTGCCTGTGAAGAACTTCGAAACAGTAGAATGTTCTTGAAGCTTCTGGAGGCCGTGCTCAAAACCGGCAACCGGATGAACGTGGGGACGAACCGAGGCGATGCACACGCATTCAAACTCGATACACTTCTCAAGCTCGTTGATGTCAAAGGCGCAGATGGCAAAACCACTCTACTTCACTTTGTGGTACAAGAAATCATCAGAACCGAAGGCGCTCGTCTCTCAGGCGCCAACCAAACAGCGGGCGCGAATTCGAACGACGATGCCAAGTGTAGAAGGCTTGGCCTGCAAGTAGTGTCTAGTCTGAGTGCCGACCTGGCGAATGTGAAGAAGGCAGCTGCAATGGACTCTGAAGTCCTAAGCAGCGAGGTGTCGAAACTCTCGAAAGGAATGGCACACATTGCAGAGGTTTTGAAGTTGAACGAAGCAGCAGGATCAGATGAAAGCAAGCATAAGTTCAGAGAGTCAATGAACAGGTTCACAAGAATGGCTGAGGAGGAGATACTAAAAGTGCAAGCACAAGAAAGTGTGGCTTTATCCCTTGTGAAGGAGATCACGGAGTATTTCCATGGGAACTTGTCAAAGGAAGAAGCTCATCCGTTTAGAATCTTCATGGTGGTGAGAGACTTCTTAACAGTTCTTGATAGGGTGTGCAAAGAAGTTGGGATGATAAACGAGAGAACGATGGTTAGTTCTGCGCATAGATTCCCTGTCCCTGTGAATCCTATGCTTCCACAACCTCTTCCTGGTCTTGTCGGAAAGAGACAGTACAATTCCTCAGACGATGATAGTCCATCTCCTTAG 3357 0.5133 MREIKEHSTMCSRSSSSFFFSLFLLIGPIFSLSSSTSVNRRILHQPFLPEGGSPPPSVPPSPPPQPSPSPSPPNPKYPFSTTPTTNASTPFFPTYPSPPPPPSPSAFASFPANISSLILPQSSKSKSSSKKLVAVAISAVACALAVVALSAFVYCRRRRQSYSADEKTLRSDSSIRLFPREASVATGGGRKPRNTSSTSSEFLYLGTIVNSRGGGVDELSEPHVAALNPRKMDSPELQPLPPLARQASRLREETAATVEDDEEEFYSPRGSLNGREGSTGTGSGSRRVFSAIAGENLVGRSSSESTSSSYSSSSSASPDRSHSISLSPPVSISPRRSQPKSPENTVVHHSPPPPPAAIRRSPSLSTLSSPSPGFGQHMPSSSSMSSTPERRECQSPSLSPLSLSPRKNLNPNPGGESSPGLVLLEKTQSFGSSKSKSDIGSPRLSNASSIGKSSAFSLPSPDKGMNLHHGLDQSPTISDVSDRFRHSPLSSLHLSPTLLSSPERELSPPSQPHPQPQPEPQPQPQPQPQHQPLPQPQPQSQPQPQLPPSRKHWEIPDLLTPIGETPMFSAPQRKQWEIPVLSVPIAPSSSSVLAPAPPPPPPPPPPVPRQRKQWEMPVPSPVTPVGQQVSKPPALTPPSRPFVLQTPNTMVSPVELPPVSSQNFEESSEESSKPKLKPLHWDKVRASSDREMVWDQLRSSSFKLNEEMIETLFVVNTPNPKPKDTTPRSVLAPQNQEDRVLDPKKSQNIAILLRALNVTIEEVCESLLEGITDTLGTELLESLLKMAPSKEEERKLKEHKDDSPTKLGPAEKFLKAVLDVPFAFKRVEAMLYIVNFESEVEYLRKSFQTLEAACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARLSGANQTAGANSNDDAKCRRLGLQVVSSLSADLANVKKAAAMDSEVLSSEVSKLSKGMAHIAEVLKLNEAAGSDESKHKFRESMNRFTRMAEEEILKVQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCKEVGMINERTMVSSAHRFPVPVNPMLPQPLPGLVGKRQYNSSDDDSPSP 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 507 545 - -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 296 345 - -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 422 460 - -
Vium5211g00004 1118 Pfam Formin Homology 2 Domain 668 1065 IPR015425 -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 591 612 - -
Vium5211g00004 1118 ProSiteProfiles Formin homology-2 (FH2) domain profile. 666 1091 IPR015425 -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 361 415 - -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 588 676 - -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 45 83 - -
Vium5211g00004 1118 Gene3D Formin, FH2 domain 660 1074 IPR042201 -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 229 571 - -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 49 79 - -
Vium5211g00004 1118 PANTHER FORMIN-RELATED 573 1105 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium5211g00004 1118 SMART it6_source 666 1080 IPR015425 -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 272 286 - -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 471 506 - -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 641 667 - -
Vium5211g00004 1118 MobiDBLite consensus disorder prediction 252 269 - -
Vium5211g00004 1118 SUPERFAMILY Formin homology 2 domain (FH2 domain) 597 1077 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5211g00004 Vium-Chr5211 24978 29691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5211g00004 39 342 FH2 protein (formin) Gene Family AT3G25500 43.887 2.67e-27 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5211g00004 - - var:108322602 1718.75