Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5211g00003 ATGGAACAATTTAGGCAAATTGGGGAGGCACTGGGGGCTTTGAAATCTGTGATGGTATTCCGGGAGAACATTCAAATAAATCAGAGGCAATGTTCTCTGCTTTTTGATGTGTTCAATTCTGCCTATGAGTGTATTGCAGATGAGATTACACAGAACTTGCAATTTGAAGAGAAGAATGTGAAGTGGAAGATTTTAGAGCAACCCCTGAGAGAGATCCATAAAATTTTCAGAGAAGGTGAAACTTACATTAGGCAATGCATGGAAACAAAGGACTGGTGGGCGAAAGCCATTACCTTATGCCACAACACTGATTGTGTTGAGTTTCATATACACAATCTGCTTTGTTGCATGCCAGTAGTAATTGAAGCCATAGAGTCTGCAGGAGAAACATCAGGGTTGGATCAAGAGGAGATGCAAAGGAAGAAGTACATAAACTCTAACAAATACAAGAAAGAGTATAGAGACATGAAGCTTTTCCAGTGGAAATTTGGGAAGCAGTACCTCGTCACTCAGGACTTATGCAACCGTTATGATAGTGTTTGGAAGGAAGATAGATGGTTTCTTTACAACAAACTCCTAGAAAAGAAAGTGGAAGGTGTGACAAAGTATGAGAAGAAATTGATAGATTTGCTTCTGAGAAATTTGGAAATAGCAGAATCAGTAGCAGGGAGGCTCCTTCCAAGCTCAATATTAGTTGGGTCTAAGGACTTTCAGGTGAGGAGAAGAATGGGGAATGCGAGTCAGTACAAGGAGATTTCATGGTTAGGTGAAAGCTTTGTGATAAGACATTTTACTGGGGACATTGAAGCTTTGCAACCTGAGATCATAGAACTTTTATCTCTTTCCCATCCAAATATAATGGACTGCCACGGTGGTTTTACCGATGAGGAGAAGAAAGAATGCTTTTTGCTAATGGAACTCATGAGCAAAACCCTTTCCACCCACATCAAAGAGATTCACGGTCCAAGAAGGCGAATACCGTTCTTGCTTCATGTAGCAGTTGATATCATGCTTCAGATTTCCAGGGGAATGGAGTATTTGCATTCAAAAAAAGTATATCATGGAGAACTAAACCCTTCAAGCATTCTTGTTAAGCCTAGAGGTGCATCCCCAGAGGGTTACTTGCATGCCAAGGTAACTGGATTTGGACTAACTTCTGTCAAGGATTTGAATCAGAAAGGGAACACAAATCAGAATGGAACTCCCCCATTCATCTGGTACTCTCCTGAAGTACTTGAGCAGGAAAACTCAGGAGGCACACCAAACTCCAAGTACACAGAGAAATCTGATGTGTACAGTTTTGGAATGGTTTGCTTTGAGCTTCTAACTGGCAAAGTCCCTTTTGAAGATAGTCATCTCCAAGGGGAGAAAATGAGCAGAAACATAAGGGCAGGAGAGAGGCCACTTTTCCCACTCAATTCACCCAAATATGTCATTAACTTGACAAAGAGATGTTGGCATATTGATCCACATCAACGTCCAAGCTTTTCTACCATATGTAGAGTTCTTCGTCATATAAAAAGATTTCTTATTATGAATCCTGGTTATAGTAGTCAGCCAGAACAACCAGTGCCACCAATAGATTATTGTGATATAGAGTCACTGCTTCTGAAGAAGTATCCTTCTTGGGGAAGTTCTGAACCAGCACCAGTATCAATAATCCCATTTCAAATGTTTTCCTATCAAGTTATAGAACGAGAAAAAATAACTTCATGCTGTAAGGATAATTCTGAGTCTGGAAGTGATGCTTCAGCCTGTGGTGATGAACTTGTTACCTCAGGGGATGAACCGTTTCCATCCACAGCTGAAAGGAAGTCTTTGCTTGGAAATGATATTATGAACAGAAAAATTATTATGCCCAGGAAATCTCTTGATTTGAAGCTCATCAAACAACCAGGCACATCGAAATGGAGATCAGCAAGACCTCCACAAATGTCCCCTCGTGCAAGAAGTATGAGAATTACATCAGAGAACAATATATCAAGTCCAAGGGCAATGAGAAGAGTATCTTCTGGTCATGTCTCAGACTCTGAGCTTTCTTAG 2043 0.4058 MEQFRQIGEALGALKSVMVFRENIQINQRQCSLLFDVFNSAYECIADEITQNLQFEEKNVKWKILEQPLREIHKIFREGETYIRQCMETKDWWAKAITLCHNTDCVEFHIHNLLCCMPVVIEAIESAGETSGLDQEEMQRKKYINSNKYKKEYRDMKLFQWKFGKQYLVTQDLCNRYDSVWKEDRWFLYNKLLEKKVEGVTKYEKKLIDLLLRNLEIAESVAGRLLPSSILVGSKDFQVRRRMGNASQYKEISWLGESFVIRHFTGDIEALQPEIIELLSLSHPNIMDCHGGFTDEEKKECFLLMELMSKTLSTHIKEIHGPRRRIPFLLHVAVDIMLQISRGMEYLHSKKVYHGELNPSSILVKPRGASPEGYLHAKVTGFGLTSVKDLNQKGNTNQNGTPPFIWYSPEVLEQENSGGTPNSKYTEKSDVYSFGMVCFELLTGKVPFEDSHLQGEKMSRNIRAGERPLFPLNSPKYVINLTKRCWHIDPHQRPSFSTICRVLRHIKRFLIMNPGYSSQPEQPVPPIDYCDIESLLLKKYPSWGSSEPAPVSIIPFQMFSYQVIEREKITSCCKDNSESGSDASACGDELVTSGDEPFPSTAERKSLLGNDIMNRKIIMPRKSLDLKLIKQPGTSKWRSARPPQMSPRARSMRITSENNISSPRAMRRVSSGHVSDSELS 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5211g00003 680 FunFam Kinase family protein 234 516 - -
Vium5211g00003 680 SUPERFAMILY Protein kinase-like (PK-like) 259 515 IPR011009 -
Vium5211g00003 680 Pfam Protein of unknown function (DUF1221) 21 234 IPR010632 -
Vium5211g00003 680 ProSiteProfiles Protein kinase domain profile. 226 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5211g00003 680 MobiDBLite consensus disorder prediction 575 601 - -
Vium5211g00003 680 MobiDBLite consensus disorder prediction 649 680 - -
Vium5211g00003 680 MobiDBLite consensus disorder prediction 630 680 - -
Vium5211g00003 680 Pfam Protein tyrosine and serine/threonine kinase 269 502 IPR001245 GO:0004672|GO:0006468
Vium5211g00003 680 Gene3D Transferase(Phosphotransferase) domain 1 255 514 - -
Vium5211g00003 680 PANTHER SERINE-THREONINE PROTEIN KINASE 261 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5211g00003 Vium-Chr5211 10363 14391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5211g00003 274 503 MAP Kinase Kinase Kinase AT5G58950 29.185 1.72e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_Gdt Vium5211g00003 PK_Tyr_Ser-Thr 2.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5211g00003 - - gmx:100813704 1202.58