Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium519g00019 TGCCTTCTTCAGTCAATAGCAGACAACTTTGGAGCGATAGCAGCACATCATAGGAATTCAGCAACTGAAGACACAGGTTTTTCTTTTATGGGGTGCAGTATCAGAGGAAGTGGCAGAGTATACCTTGGCAGAGCATGGGGGAACTACTCTAGAATTATATACTCCAAATGTAATATGGATGACATTATTATTCCTGAAGGGTGGTCAGATTGGAATCACTCAGATAGAAAGAAGACTGCAGTGTTTGGGGAGTATGAATGCAATGGAAAAGGAGCAGATAGAAGCAACAGGGCAGCTTGGTCAAAATCATTCAGCTATGATGAAGCAGTGCCTTTCCTGCAGAAGAGTTTCATACATGGAGACCAGTGGCTCAGACTATAG 381 0.4304 CLLQSIADNFGAIAAHHRNSATEDTGFSFMGCSIRGSGRVYLGRAWGNYSRIIYSKCNMDDIIIPEGWSDWNHSDRKKTAVFGEYECNGKGADRSNRAAWSKSFSYDEAVPFLQKSFIHGDQWLRL 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium519g00019 126 Pfam Pectinesterase 8 121 IPR000070 GO:0030599|GO:0042545
Vium519g00019 126 SUPERFAMILY Pectin lyase-like 8 124 IPR011050 -
Vium519g00019 126 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 3 125 - -
Vium519g00019 126 Gene3D - 1 126 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium519g00019 Vium-Chr519 86015 86648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium519g00019 1 124 Carbohydrate Esterase AT5G47500 46.400 1.35e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium519g00019 K01051 - vum:124844444 271.937