Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium519g00010 ATGACCAACAATAATGTAAAGGAGCCCTTGCTGTCAGGATCACTGAATGAGACTCAAAAAGCTAAACGGCTGTTAAACAAGAGAAGGTTACACCGCTCTAGAAGTGCTCCTAACACAGATCTTGTTCCTTCTGAGACACAATGCAAAGAAACAACTCATCCAAAAACATCCATATTTCAGAATTTACATCCAAATTATAAAAGAGTGGCTATCTACCTTGCAGTATATTTAGGTGTAGGTGCTTTAATCTTCTTTCTTGTCAGGGACCAGATCAAGGGGACGAAAACAGATGGAATTCTTGATGCTTTGTACTTTACAATTGTTACAATGACCACTGTTGGATATGGAGATTCTTGTGCAGATAGCCACCTAACAAAACTACTTGCATGTGCCCTTTGTTTCTCTGGATGGCATGATCGGATTGAATGTAAGCAACGCAGCAGATTCTTAGTTGAGAAACAGGAACTTTTGCTAGTTAAAGCTATGCACGTGCACCAAAAAGTTGATTCAACTGGAATATTAAGGGAGCTTGAGACCAATAAAACAAGATACAAACTTTTTGTAGTCTTTTTCCTCCTTTTGGTTCTCTTCACTGCAGGGACAATTTTTCTGGTGACTGTTGAGAAATTGGATGTTATCGATGCATTCTACTGTGTTTGTTCTACCATTACAACCCTTGGTTATGGGGACAAAAGCTTCTCAACTCAAGCAGGAAGAATATTTGCCGTGTTTTGGATATTGACAGGTACTATTACTTTGGCTCAGTTTTTCCTCTACATTGCTGAGCTAAACACTGAAATCAGACAAAAGGAGCTTGTGAAGTGGGTGCTTACAAGGAAAGTGACCAATTTAGATTTGGAGGCTGCTGATCTTGATGAGGATGGAACTGTTGGGGCTGCTGAATTTGTATTTTAA 915 0.3934 MTNNNVKEPLLSGSLNETQKAKRLLNKRRLHRSRSAPNTDLVPSETQCKETTHPKTSIFQNLHPNYKRVAIYLAVYLGVGALIFFLVRDQIKGTKTDGILDALYFTIVTMTTVGYGDSCADSHLTKLLACALCFSGWHDRIECKQRSRFLVEKQELLLVKAMHVHQKVDSTGILRELETNKTRYKLFVVFFLLLVLFTAGTIFLVTVEKLDVIDAFYCVCSTITTLGYGDKSFSTQAGRIFAVFWILTGTITLAQFFLYIAELNTEIRQKELVKWVLTRKVTNLDLEAADLDEDGTVGAAEFVF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium519g00010 304 SUPERFAMILY Voltage-gated potassium channels 177 281 - -
Vium519g00010 304 PRINTS Two pore domain K+ channel signature 295 304 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium519g00010 304 PRINTS Two pore domain K+ channel signature 221 249 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium519g00010 304 ProSitePatterns EF-hand calcium-binding domain. 290 302 IPR018247 -
Vium519g00010 304 Gene3D - 63 137 - -
Vium519g00010 304 MobiDBLite consensus disorder prediction 28 47 - -
Vium519g00010 304 SUPERFAMILY Voltage-gated potassium channels 69 136 - -
Vium519g00010 304 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 69 132 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium519g00010 304 Gene3D - 163 286 - -
Vium519g00010 304 FunFam Two-pore potassium channel 1 166 274 - -
Vium519g00010 304 Pfam Ion channel 72 136 IPR013099 -
Vium519g00010 304 Pfam Ion channel 192 264 IPR013099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium519g00010 Vium-Chr519 62143 64445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium519g00010 49 303 Ion Channels AT5G55630 62.646 1.04e-111 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium519g00010 K05389 - gmx:100777388 444.506