Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium519g00005 ATGGCTGACTCGGACAACGACTCGGGAGGAGCGCAGAACGCGGGGAACAGCGGCTTCAGTGAGTTATCGCCTCGGGAACAGGACCGCTTCCTTCCAATCGCCAACGTAAGCAGGATCATGAAAAAGGCTCTGCCGGCGAACGCCAAGATCTCCAAGGACGCCAAAGAGACCGTGCAGGAATGCGTGTCGGAGTTCATAAGTTTCATAACCGGCGAAGCTTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACAATCAACGGCGATGACCTTCTGTGGGCCATGACCACCTTAGGATTCGAGGACTACGTGGAGCCTCTCAAAATTTACCTCCAGCGCTTCCGCGAGATCGAGGGAGAGAAGACCGTCGCCGCACGCGACAAGGACGCCGCCGCCTCCTCCTCCGTGAGCGGCTACGACTACTCCCCGTCCTCCGCCGCCGCCATGATGCATCATCCGGGACACGTCTACGGGTCCCCCGCGTTCCATCAAGTGAGTGCCGCTCCCGTTATGGGTAAGCCTGGACCTGGGCCTGGGCCTGGGCCCAATTATCCTGCCCCTGGTAGACCCAGATAA 573 0.6003 MADSDNDSGGAQNAGNSGFSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREIEGEKTVAARDKDAAASSSVSGYDYSPSSAAAMMHHPGHVYGSPAFHQVSAAPVMGKPGPGPGPGPNYPAPGRPR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium519g00005 190 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 130 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vium519g00005 190 MobiDBLite consensus disorder prediction 1 26 - -
Vium519g00005 190 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vium519g00005 190 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vium519g00005 190 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vium519g00005 190 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Vium519g00005 190 Gene3D Histone, subunit A 19 142 IPR009072 GO:0046982
Vium519g00005 190 MobiDBLite consensus disorder prediction 1 23 - -
Vium519g00005 190 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Vium519g00005 190 SUPERFAMILY Histone-fold 27 129 IPR009072 GO:0046982
Vium519g00005 190 MobiDBLite consensus disorder prediction 166 190 - -
Vium519g00005 190 MobiDBLite consensus disorder prediction 172 190 - -
Vium519g00005 190 FunFam Nuclear transcription factor Y subunit B-3 19 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium519g00005 Vium-Chr519 46437 47409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium519g00005 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.290 1.33e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium519g00005 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium519g00005 K08065 - gmx:100500556 259.61