LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium519g00002	ATGGGCACGTGCATGTGCATGGTTGTCTTCTTCATCTTCATGCTCTTCTTGGGCGCTCTATGTGAGGTGGCAGCCACACAAAACAACGTCGTCGGCTTCGACTTCCCTTCTTTCACCCTCGACAACAACAACATCACCCTCCTAGGCGATTCCTTTTTATGGAGCAACGGCGTCGTAAGACTCACAAACGTCGCATCCACTTCCAGCACCGGCGCCGTCATCTACGCCTACCCCATCCCACTCTTCCACCCTCCAACCGCCACCTTCGCCTCCTTCTCCACCACCTTCACCTTCTCCATCAACAACCTCAACCCCGCCTCCTCCGGCGACGGCCTTGCCTTTTTCCTCTCCCCGAACACCACCTCCACCAATCTCTCCCTCTCCGCTCCACTCGGCCTCCCCTCCTCCTTCGTCGCCGTCGAGTTCGACACGCACTTGGACCCCCGCTTCGGCGACCCTAACGAGAACCATGTCGGCTTCGACGTCGACTCCATGAAGTCCCTCAAAACCGGTGACCCCATCTTGCACGGCATCGACCTCAAGAGCGGCAACACCATCATCGCATGGATCGACTACGACGCCGGTCGAACTTCTCTCGCCGTTTTCTTGAGCTATTCACTTCCAAAACCCGTGGACCCCGTCCTCTCCGTCAAGTTCAATCTTTCTCAACACTTGAGAAACCCCGTCTACATTGGATTCTCCGCTTCCACCCAAGGAATTACCGAGATTCACCAAATCCAGAGTTGGACCTTTCACAGTGCTTGTGCTCCCGCAAGAACGAGGTTGCACCCTCACAACGTTTCCGTGATGGGAACTGTACCTATTTCTGGTTCGGGTTCAGGTTCTGGTTCTGGTTCTGGTGGTTCTGCTTCTGTTTCTAGTCCAAGCACTAATTCTACTTCCAAGAAGCATGGCAAGAGGGTTGGCGTTGGTGTGGTTGTTGCGGGATCGGTCTCTTTCTTTGTGGTTTTTTCAGTCTTGGGGTATGTTTTTGTTCGGAGATCGAGGGGTGGGAGAGAAGAAAAGTTTGAGAATGGTTTCGTGGCATGTCCTAGGGCGTTCGATTACAAAGAGTTGAAGTCTGCGACAAGAGAGTTTCATCCGAGTAGGATTGTTGGGCACGGATCTTTTGGGACGGTGTATAAGGCGTTCTTTATCTCTTCCGGAACCATTGCTGCAGTGAAAAGGTCGCGGCACTCTCACGAAGGGAAGACAGAGTTTCAGGCTGAACTGTCCATCATAGCCGGTTTGCGGCACAAGAATTTGGTTCAGCTGCAAGGTTGGTGTGTTGAGAAGGGAGAGTTACTGCTGGTGTATGAGTTTATGCCCAATGGAAGTTTAGACAAGATGCTTTACAAGGAACCTGAAGTGGGGAGGTTGCTGAGTTGGTCTCACAGGGTGAACATTGCTGTTGGGTTGGCCTCTGTACTGGTTTACCTACACCAAGAGTGTGAGAGGAGAGTGGTTCACAGGGACATTAAGACTGGTAACATATTGCTGGATGGAAACATGAATCCTAGGTTGGGGGATTTTGGATTGGCAAAGCTGATGGATCATGATAAGAGTCCTGTGTCCACTTTGACTGCTGGAACAATGGGGTACCTTGCCCCTGAGTATCTTCAGTATGGAAAGGCCACTGACAAGTCTGATGTTTTCAGCTATGGGGTGGTTGTGCTTGAAGTGGCTTGTGGAAGGAGGCCAATTGAGAGAGAAGGGTCGAAAATGGTGAATCTGATTGAGTGGGTTTGGGGGCTGCATTCTGAAGGAAAGGTGATTGAAGCTGCTGATAAGAGGTTGAATGGGGAATTTGAGGAAGAGGAAATGAGGATTCTTTTGCTCTTGGGATTGAGTTGTGCTAACCCTGATACTGCTGGGAGGCCTTCCATGAGAAGGGTGCTCCAGATTCTGAACCATGAGGCTCCACCACTTACTGTGCCAAAAGTTAAGCCAACACTCACCTTCTCCTCTGCACTTCCCCTCACTATTGAGGACATTGTTTCTGACACTGAAGAAGTGTTCAGTACCAGCAGGTCTGTGTGTGAGATCAACTTTGACTGA	2058	0.5097	MGTCMCMVVFFIFMLFLGALCEVAATQNNVVGFDFPSFTLDNNNITLLGDSFLWSNGVVRLTNVASTSSTGAVIYAYPIPLFHPPTATFASFSTTFTFSINNLNPASSGDGLAFFLSPNTTSTNLSLSAPLGLPSSFVAVEFDTHLDPRFGDPNENHVGFDVDSMKSLKTGDPILHGIDLKSGNTIIAWIDYDAGRTSLAVFLSYSLPKPVDPVLSVKFNLSQHLRNPVYIGFSASTQGITEIHQIQSWTFHSACAPARTRLHPHNVSVMGTVPISGSGSGSGSGSGGSASVSSPSTNSTSKKHGKRVGVGVVVAGSVSFFVVFSVLGYVFVRRSRGGREEKFENGFVACPRAFDYKELKSATREFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFQAELSIIAGLRHKNLVQLQGWCVEKGELLLVYEFMPNGSLDKMLYKEPEVGRLLSWSHRVNIAVGLASVLVYLHQECERRVVHRDIKTGNILLDGNMNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATDKSDVFSYGVVVLEVACGRRPIEREGSKMVNLIEWVWGLHSEGKVIEAADKRLNGEFEEEEMRILLLLGLSCANPDTAGRPSMRRVLQILNHEAPPLTVPKVKPTLTFSSALPLTIEDIVSDTEEVFSTSRSVCEINFD	685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium519g00002	685	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	488	500	IPR008271	GO:0004672\|GO:0006468
	Vium519g00002	685	Gene3D	Phosphorylase Kinase; domain 1	332	441	-	-
	Vium519g00002	685	SUPERFAMILY	Protein kinase-like (PK-like)	349	657	IPR011009	-
	Vium519g00002	685	MobiDBLite	consensus disorder prediction	273	305	-	-
	Vium519g00002	685	ProSiteProfiles	Protein kinase domain profile.	366	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium519g00002	685	SMART	serkin_6	366	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium519g00002	685	Pfam	Legume lectin domain	33	259	IPR001220	GO:0030246
	Vium519g00002	685	PANTHER	-	46	641	-	-
	Vium519g00002	685	FunFam	L-type lectin-domain containing receptor kinase VIII.1	442	654	-	-
	Vium519g00002	685	Pfam	Protein kinase domain	367	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium519g00002	685	ProSitePatterns	Legume lectins beta-chain signature.	138	144	IPR019825	-
	Vium519g00002	685	Gene3D	Transferase(Phosphotransferase) domain 1	442	655	-	-
	Vium519g00002	685	ProSitePatterns	Protein kinases ATP-binding region signature.	372	395	IPR017441	GO:0005524
	Vium519g00002	685	CDD	STKc_IRAK	372	637	-	-
	Vium519g00002	685	SUPERFAMILY	Concanavalin A-like lectins/glucanases	32	254	IPR013320	-
	Vium519g00002	685	MobiDBLite	consensus disorder prediction	273	304	-	-
	Vium519g00002	685	CDD	lectin_legume_LecRK_Arcelin_ConA	33	253	IPR001220	GO:0030246
	Vium519g00002	685	Gene3D	-	29	255	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium519g00002	Vium-Chr519	31455	33840	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium519g00002	7	671	Receptor kinase-like Gene Family	AT5G55830	55.411	0.0	690

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vium519g00002		Pkinase	4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium519g00002	-		-	gmx:102668712	907.131