Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5198g00009 ATGTGTGCAGAGATGGAAAGCTGTACCAGTAACAGCAGTGACAACAATCACTGGAGAGCCGAGGAAGCCATTGGTGGCAACGCTGAAGCTCTTCAGGCCCTTAGAGAACTCATCATATTTCCTCTTCATTTCTCACAAGAGGCAAAGAAGCTTGGCCTTAAGTGGTCCAGAGGATTGCTGCTGTACGGTCCACCAGGAACTGGAAAGACAAGTTTGGTACGAGCAGTTGTTCGGGAGTGTGGGGCACATTTGACAATTATCAGAAGGGAACAAGATGTTCGACTTGCCTCTCAACTATTTACACTGATGGACTCAATTAAACCAACCTATTCTACACCAGGCGTAGTTGTTGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCACTAAGAAGGTCTGGACGTTTTGATGCTGAAATAGAAGTTACTGTCCCAAATGAAGAGGACCGCTATCAAATTCTGAAGTTGTATACAAAGACAATTCCCTTGGATCCCAGTATTGACTTAAAGTCTATTGCTGCATTGTGCAATGGTTATGTTGGAGCTGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGATTGCAATTAAACGATATTCAAACGCAGAAGATGCTAGTAATTTCAGTCTAACAATGAAAGATTGGAAGAATGCGAGGTCTGTTGTTGGTCCCAGTATAACAAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGAAGACATTGGTGGATTAAAAGAATTAAAGAAAAAACTCCAGCAAGCTGTCGAATGGCCTATTAAGCATTCTGCTGCATTTTCAAGATTAGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTCCTGGATGTTCCAAAACTACCCTTGCCAAAGCGGCTGCACATGCTGCCCAAGCATCTTTCTTTTCCTTAAGTGGTGCAGAATTGTATTCGATGTATGTTGGAGAGGGGGAAGCTTTACTTCGGAAAACATTTCATAGAGCACGCCTTGCAGCACCCAGTATAATATTCTTTGACGAGGCTGATGTGGTAGCTGCCAAACGGGGTGACAGTTCAAGTAATAGTGCTACAGTTGGAGAGAGACTTTTATCCACTCTGCTAACTGAGATTGATGGCTTAGAAGAAGCAAAAGGAATTCTTGTTTTAGCAGCTACAAATCGCCCCTATGCAATTGACGCTGCACTCATGCGTCCTGGGCGTTTTGATCAGGTTCTGTATGTACCACCACCTGATTTAGAGGCTCGATACGAGATACTTTGTGTTCATACGCGAAAGATGAAAACAGGTCATGATGTTGACCTCAGAAGGCTAGCAGAAGACACAGAACTGTTTACAGGTGCTGAACTGGAGGGACTATGCAAGGAAGCTGGAATTGTAGCTCTAAGGGAAGACATATCTGCTGCCATTGTGTTTGATCGCCATTTCCAGATTGCAAAGAGTTCTTTAAAACCAGCTTTAACAAAAGCAGAAATTGACTCGTACTCATCTTTCATGAAGACCTCATCTCGAGCTTTGCCAAGCCACTCCGAACCAGGTTTGAAAGGAGACAAAGGCAAAAGGAACAGGTCAGATTCTTTGTCTTTGGTCAAAATTTGGGTTGTCAGCTGCTTGTTAGTGGCTGCTGCTGCTGAATACATATATCGTGTATGGGGAAACCAAAGTGTACATGACATAGCTACCTGA 1689 0.4381 MCAEMESCTSNSSDNNHWRAEEAIGGNAEALQALRELIIFPLHFSQEAKKLGLKWSRGLLLYGPPGTGKTSLVRAVVRECGAHLTIIRREQDVRLASQLFTLMDSIKPTYSTPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRYQILKLYTKTIPLDPSIDLKSIAALCNGYVGADLEALCREATMIAIKRYSNAEDASNFSLTMKDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSAAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRKTFHRARLAAPSIIFFDEADVVAAKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDQVLYVPPPDLEARYEILCVHTRKMKTGHDVDLRRLAEDTELFTGAELEGLCKEAGIVALREDISAAIVFDRHFQIAKSSLKPALTKAEIDSYSSFMKTSSRALPSHSEPGLKGDKGKRNRSDSLSLVKIWVVSCLLVAAAAEYIYRVWGNQSVHDIAT 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5198g00009 562 Pfam AAA+ lid domain 433 477 IPR041569 -
Vium5198g00009 562 Pfam AAA+ lid domain 167 215 IPR041569 -
Vium5198g00009 562 MobiDBLite consensus disorder prediction 504 523 - -
Vium5198g00009 562 Pfam ATPase family associated with various cellular activities (AAA) 90 143 IPR003959 GO:0005524|GO:0016887
Vium5198g00009 562 Pfam ATPase family associated with various cellular activities (AAA) 59 87 IPR003959 GO:0005524|GO:0016887
Vium5198g00009 562 Pfam ATPase family associated with various cellular activities (AAA) 278 410 IPR003959 GO:0005524|GO:0016887
Vium5198g00009 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 227 IPR027417 -
Vium5198g00009 562 Gene3D - 8 90 IPR027417 -
Vium5198g00009 562 Gene3D - 147 227 - -
Vium5198g00009 562 SMART AAA_5 274 413 IPR003593 GO:0016887
Vium5198g00009 562 SMART AAA_5 55 147 IPR003593 GO:0016887
Vium5198g00009 562 Gene3D - 228 412 IPR027417 -
Vium5198g00009 562 Gene3D - 91 146 IPR027417 -
Vium5198g00009 562 PANTHER AAA-FAMILY ATPASE 22 83 - -
Vium5198g00009 562 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 63 82 - -
Vium5198g00009 562 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 359 378 - -
Vium5198g00009 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 489 IPR027417 -
Vium5198g00009 562 Gene3D - 413 504 - -
Vium5198g00009 562 ProSitePatterns AAA-protein family signature. 381 399 IPR003960 GO:0005524|GO:0016887
Vium5198g00009 562 FunFam spermatogenesis-associated protein 5-like protein 1 412 498 - -
Vium5198g00009 562 CDD RecA-like_CDC48_r2-like 249 409 - -
Vium5198g00009 562 FunFam Cell division control protein 48-B-like protein 228 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5198g00009 Vium-Chr5198 82058 94584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5198g00009 209 513 Calmodulin-binding Proteins AT3G56690 45.246 9.79e-83 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5198g00009 - - vra:106755317 1038.1