Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5198g00008 ATGTGTGCAGAGATGGAAAGCTGTACCAGTAACAGCAGTGACAACAATCACTGGAGAGCCGAGGAAGCCATTGGTGGCAACGCTGAAGCTCTTCAGGCCCTTAGAGAACTCATCATATTTCCTCTTCATTTCTCACAAGAGGCAAAGAAGCTTGGCCTTAAGTGGTCCAGAGGATTGCTGCTGTACGGTCCACCAGGAACTGGAAAGACAAGTTTGGTACGAGCAGTTGTTCGGGAGTGTGGGGCACATTTGACAATTATCAGTCCACACACTGTTCACAGAGCACATGCTGGTGAGAGTGAGAGAATTCTCCGTGATGCTTTTTCTGAGGCATCATCTAATGTAGCCTGGGGCAAGCCATCCGTTATCTTTATAGATGAAATAGATGCGTTGTGTGCTCGCCGAAGTTCCAAAAGGGAACAAGATGTTCGACTTGCCTCTCAACTATTTACACTGATGGACTCAATTAAACCAACCTATTCTACACCAGGCGTAGTTGTTGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCACTAAGAAGGTCTGGACGTTTTGATGCTGAAATAGAAGTTACTGTCCCAAATGAAGAGGACCGCTATCAAATTCTGAAGTTGTATACAAAGACAATTCCCTTGGATCCCAGTATTGACTTAAAGTCTATTGCTGCATTGTGCAATGGTTATGTTGGAGCTGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGATTGCAATTAAACGATATTCAAACGCAGAAGATGCTAGTAATTTCAGTCTAACAATGAAAGATTGGAAGAATGCGAGGTCTGTTGTTGGTCCCAGTATAACAAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGAAGACATTGGTGGATTAAAAGAATTAAAGAAAAAACTCCAGCAAGCTGTCGAATGGCCTATTAAGCATTCTGCTGCATTTTCAAGATTAGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTCCTGGATGTTCCAAAACTACCCTTGCCAAAGCGGCTGCACATGCTGCCCAAGCATCTTTCTTTTCCTTAAGTGGTGCAGAATTGTATTCGATGTATGTTGGAGAGGGGGAAGCTTTACTTCGGAAAACATTTCATAGAGCACGCCTTGCAGCACCCAGTATAATATTCTTTGACGAGGCTGATGTGGTAGCTGCCAAACGGGGTGACAGTTCAAGTAATAGTGCTACAGTTGGAGAGAGACTTTTATCCACTCTGCTAACTGAGATTGATGGCTTAGAAGAAGCAAAAGGAATTCTTGTTTTAGCAGCTACAAATCGCCCCTATGCAATTGACGCTGCACTCATGCGTCCTGGGCGTTTTGATCAGGTTCTGTATGTACCACCACCTGATTTAGAGGCTCGATACGAGATACTTTGTGTTCATACGCGAAAGATGAAAACAGGTCATGATGTTGACCTCAGAAGGCTAGCAGAAGACACAGAACTGTTTACAGGTGCTGAACTGGAGGGACTATGCAAGGAAGCTGGAATTGTAGCTCTAAGGGAAGACATATCTGCTGCCATTGTGTTTGATCGCCATTTCCAGATTGCAAAGAGTTCTTTAAAACCAGCTTTAACAAAAGCAGAAATTGACTCGTACTCATCTTTCATGAAGACCTCATCTCGAGCTTTGCCAAGCCACTCCGAACCAGGTTTGAAAGGAGACAAAGGCAAAAGGAACAGGTCAGATTCTTTGTCTTTGGTCAAAATTTGGGTTGTCAGCTGCTTGTTAGTGGCTGCTGCTGCTGAATACATATATCGTGTATGGGGAAACCAAAGTGTACATGACATAGCTACCTGA 1839 0.4405 MCAEMESCTSNSSDNNHWRAEEAIGGNAEALQALRELIIFPLHFSQEAKKLGLKWSRGLLLYGPPGTGKTSLVRAVVRECGAHLTIISPHTVHRAHAGESERILRDAFSEASSNVAWGKPSVIFIDEIDALCARRSSKREQDVRLASQLFTLMDSIKPTYSTPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRYQILKLYTKTIPLDPSIDLKSIAALCNGYVGADLEALCREATMIAIKRYSNAEDASNFSLTMKDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSAAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRKTFHRARLAAPSIIFFDEADVVAAKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDQVLYVPPPDLEARYEILCVHTRKMKTGHDVDLRRLAEDTELFTGAELEGLCKEAGIVALREDISAAIVFDRHFQIAKSSLKPALTKAEIDSYSSFMKTSSRALPSHSEPGLKGDKGKRNRSDSLSLVKIWVVSCLLVAAAAEYIYRVWGNQSVHDIAT 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5198g00008 612 Gene3D - 463 554 - -
Vium5198g00008 612 SMART AAA_5 55 197 IPR003593 GO:0016887
Vium5198g00008 612 SMART AAA_5 324 463 IPR003593 GO:0016887
Vium5198g00008 612 Pfam AAA+ lid domain 483 527 IPR041569 -
Vium5198g00008 612 Pfam AAA+ lid domain 217 265 IPR041569 -
Vium5198g00008 612 ProSitePatterns AAA-protein family signature. 431 449 IPR003960 GO:0005524|GO:0016887
Vium5198g00008 612 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 409 428 - -
Vium5198g00008 612 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 63 82 - -
Vium5198g00008 612 Pfam ATPase family associated with various cellular activities (AAA) 328 460 IPR003959 GO:0005524|GO:0016887
Vium5198g00008 612 Pfam ATPase family associated with various cellular activities (AAA) 59 193 IPR003959 GO:0005524|GO:0016887
Vium5198g00008 612 Gene3D - 196 277 - -
Vium5198g00008 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 539 IPR027417 -
Vium5198g00008 612 CDD RecA-like_CDC48_r2-like 299 459 - -
Vium5198g00008 612 FunFam Cell division control protein 48 homolog B 16 194 - -
Vium5198g00008 612 Gene3D - 278 462 IPR027417 -
Vium5198g00008 612 MobiDBLite consensus disorder prediction 554 573 - -
Vium5198g00008 612 FunFam Cell division control protein 48-B-like protein 278 462 - -
Vium5198g00008 612 Gene3D - 8 194 IPR027417 -
Vium5198g00008 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 277 IPR027417 -
Vium5198g00008 612 CDD RecA-like_CDC48_NLV2_r1-like 23 193 - -
Vium5198g00008 612 FunFam spermatogenesis-associated protein 5-like protein 1 462 548 - -
Vium5198g00008 612 PANTHER AAA-FAMILY ATPASE 20 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5198g00008 Vium-Chr5198 82058 94584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5198g00008 259 563 Calmodulin-binding Proteins AT3G56690 45.246 3.65e-82 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5198g00008 - - vra:106755317 1161.75