Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5198g00007 ATGTGTGCAGAGATGGAAAGCTGTACCAGTAACAGCAGTGACAACAATCACTGGAGAGCCGAGGAAGCCATTGGTGGCAACGCTGAAGCTCTTCAGGCCCTTAGAGAACTCATCATATTTCCTCTTCATTTCTCACAAGAGGCAAAGAAGCTTGGCCTTAAGTGGTCCAGAGGATTGCTGCTGTACGGTCCACCAGGAACTGGAAAGACAAGTTTGGTACGAGCAGTTGTTCGGGAGTGTGGGGCACATTTGACAATTATCAGTCCACACACTGTTCACAGAGCACATGCTGGTGAGAGTGAGAGAATTCTCCGTGATGCTTTTTCTGAGGCATCATCTAATGTAGCCTGGGGCAAGCCATCCGTTATCTTTATAGATGAAATAGATGCGTTGTGTGCTCGCCGAAGTTCCAAAAGGGAACAAGATGTTCGACTTGCCTCTCAACTATTTACACTGATGGACTCAATTAAACCAACCTATTCTACACCAGGCGTAGTTGTTGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCACTAAGAAGGTCTGGACGTTTTGATGCTGAAATAGAAGTTACTGTCCCAAATGAAGAGGACCGCTATCAAATTCTGAAGTTGTATACAAAGACAATTCCCTTGGATCCCAGTATTGACTTAAAGTCTATTGCTGCATTGTGCAATGGTTATGTTGGAGCTGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGATTGCAATTAAACGATATTCAAACGCAGAAGATGCTAGTAATTTCAGTCTAACAATGAAAGATTGGAAGAATGCGAGGTCTGTTGTTGGTCCCAGTATAACAAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGAAGACATTGGTGGATTAAAAGAATTAAAGAAAAAACTCCAGCAAGCTGTCGAATGGCCTATTAAGCATTCTGCTGCATTTTCAAGATTAGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTCCTGGATGTTCCAAAACTACCCTTGCCAAAGCGGCTGCACATGCTGCCCAAGCATCTTTCTTTTCCTTAAGTGGTGCAGAATTGTATTCGATGTATGTTGGAGAGGGGGAAGCTTTACTTCGGAAAACATTTCATAGAGCACGCCTTGCAGCACCCAGTATAATATTCTTTGACGAGGCTGATGTGGTAGCTGCCAAACGGGGTGACAGTTCAAGTAATAGTGCTACAGTTGGAGAGAGACTTTTATCCACTCTGCTAACTGAGATTGATGGCTTAGAAGAAGCAAAAGGAATTCTTGTTTTAGCAGCTACAAATCGCCCCTATGCAATTGACGCTGCACTCATGCGTCCTGGGCGTTTTGATCAGTAG 1368 0.4423 MCAEMESCTSNSSDNNHWRAEEAIGGNAEALQALRELIIFPLHFSQEAKKLGLKWSRGLLLYGPPGTGKTSLVRAVVRECGAHLTIISPHTVHRAHAGESERILRDAFSEASSNVAWGKPSVIFIDEIDALCARRSSKREQDVRLASQLFTLMDSIKPTYSTPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRYQILKLYTKTIPLDPSIDLKSIAALCNGYVGADLEALCREATMIAIKRYSNAEDASNFSLTMKDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSAAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRKTFHRARLAAPSIIFFDEADVVAAKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5198g00007 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 277 IPR027417 -
Vium5198g00007 455 Pfam AAA+ lid domain 217 265 IPR041569 -
Vium5198g00007 455 FunFam Cell division control protein 48 homolog B 16 194 - -
Vium5198g00007 455 ProSitePatterns AAA-protein family signature. 431 449 IPR003960 GO:0005524|GO:0016887
Vium5198g00007 455 PANTHER AAA-FAMILY ATPASE 20 455 - -
Vium5198g00007 455 Gene3D - 196 287 - -
Vium5198g00007 455 SMART AAA_5 55 197 IPR003593 GO:0016887
Vium5198g00007 455 SMART AAA_5 324 454 IPR003593 GO:0016887
Vium5198g00007 455 Gene3D - 8 194 IPR027417 -
Vium5198g00007 455 FunFam Cell division control protein 48-B-like protein 278 455 - -
Vium5198g00007 455 Gene3D - 288 455 IPR027417 -
Vium5198g00007 455 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 409 428 - -
Vium5198g00007 455 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 63 82 - -
Vium5198g00007 455 CDD RecA-like_CDC48_NLV2_r1-like 23 193 - -
Vium5198g00007 455 Pfam ATPase family associated with various cellular activities (AAA) 328 454 IPR003959 GO:0005524|GO:0016887
Vium5198g00007 455 Pfam ATPase family associated with various cellular activities (AAA) 59 193 IPR003959 GO:0005524|GO:0016887
Vium5198g00007 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 454 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5198g00007 Vium-Chr5198 82056 94086 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5198g00007 259 455 Calmodulin-binding Proteins AT3G56690 50.761 2.42e-62 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5198g00007 - - vra:106755317 856.67