Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5191g00002 ATGGAGTCTAGGAGAGATCGCAGGACAGAAGCTCTTGGAGACCTACGAGTCCTTCCCGACGAAATCCTCTGCGCGATTTTGGAACGTTTCACTCCCAGAGATGTTGCTCGGGTGGCTTGTGTTAGCAGTGTGATGTACACACTATGCAACGAAGAACCGTTGTGGATGAGTCTATGCCTAAAAGAAGCGACTGGTTTGCTTCAATACAAAGGCTCTTGGAAGAAAACTGTTCTGCATAATTTGAATCTTCCCGACAAATACAAAGAATACCATAGAGGACCTTTATATTTTGATGGGTTCAACTCTTTATTTTTGTACAGGAGATTATACCGCTGTCATACCACATTGGGTGCATTTCATGCTGATACTGGAAATGTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTATAATGAGTATGATGCAAAGAAACCGGTTATGCTCAGTGGATTGGCTGATACATGGCCCGCCAGGCATAAATGGACAACTGACCAGTTGTTGCTAAACTACGGAGATGTAGCATTTAAAATTTCTCAACGGGGCGCCCGGAAGATCTCCATGAAGTTCAAGGATTATGTCTCGTACATGAAAGTTCAGCATGATGAAGATCCCTTGTATATTTTTGATGAAAAGTTTGGTGAAGCTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTGAAGAAGACTTCTTTGATATCTTAGACACAGATAAAAGACCATCCTATAAGTGGTTCATAATTGGACCAGAGAGATCCGGTGCCTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTTGTGGGCGTAAAAGGTGGGCATTATATCCGCCAGGAAAAGTGCCTTTGGGTGTGACTGTTCATGTTAATGAAGAAGACGGTGATGTCAATGTTGAGACTCCATCATCACTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGACGAAGACAAGCCAATTGAGTGTACACAGCTACCTGGAGAAACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTGCTAAATTTGGAAACAACTATTGCTGTCACGCAGAATTTTGTGAATTCCAACAATTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCATCATAAAGGAGTTTGCCGTGTTGGGTTGCTTGCTCTTGATGAAGATGGTTATGAAAATGTCAGACAGAACATACCATGTAAGGAAAATAACTCAAGTTACAATGATTTGTCAAGGAAAGAGAAAAGAGCCAAAACTCAGAAAGATGTTGACGGTATATATAATAAAAGAGCCATAAATGGTGTATCTAGAAGCTACAATTTATGGAAAGATGGATTTTCCTATGATATAAACTTCTTATCCATGTTTTTGGATAAAGACAGAGACCACTACAGTTCCCTGTGGAGCTCAGGAAACAGCATTGGTCAGCGAGAACTAAGAGAATGGCTATCCAAGCTCTGGATTCAAAAACCAAAATTAAGAGAGCTATTATGGAAGGGAGCATGTATTGCACTAAATGCCAACAAGTGGTTAGAATGCTTATCAAAAATTTGTGCCTTCCATAATTTGCCCCCTCCCACTGACGATGAAAGGCTTCCAGTTGGTACGGGTAGCAATCCTGTTTATTTAGTGGGAAACACTGTTGTTAAAATTTTTGTTGAAGGAGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAGTTTCAGAGTCGGTTGCATGAAGCCAACTCCCCGCTTAGTAAACATATACCTGATGTTTTGGCCAGTGGAATTATTTATCTTGAAAATGGATCTTGTACCAATTTAAGTTGGGATGGAAAAGGTGTACCTGATATCATTGTGAAAAACGATATCACCAGTAGGAAATGCAGTGTCGATGATTTCTCATTTGGGGTGTGGGGCAGGAAACAGTTAGAGTATAGGAATGCTGGGATGCCTGTGGATGAAGCAGGTAGCTTAGCTGGTAACTCAAACACATGGCCATATGTGATAACAAAACGATGTGCAGGGAATATGTTTGCAGAATTAAGAGATAAACTGACATGGGAAGATACAACAAACTTGGCCTCATTCTTGGGGGAGCAACTGCATCATCTTCATCTTTTGTCATATCCGCCTCCAAATATCTCATCTTTCTCTGATATTGATCATGAATTAAGCTTGGTTGAGGCTAATGGTTCTATGACAAGTGTTAACAGTAAATCAAATGTTACAGCAGAATGGTGGCTCTTCACCAGAACCTTAGCAAAGATGAGGAAAGATGTGGCAAGCCGTTTGACCAAGTGGGGTGATCCAATTCCTAGCAAACTCATTGAGAAGATTGATGAATATATTCCACCTGATTTTGCTGAGAAGTTTGGAAACTATGCTTGTAAACCTTGCTCCTGGATACACACGGACATTATGGATGATAACATTTACATGAAACCATCATTGGTTTGCTCTACCCCTGCTGGGAATAATGAAGATAGCACCATGCTGGGCAATGGTTTGTTGAGTAATCATGAAGTAAAATCATGGTGTCCTAGTCACATTCTTGACTTTAGTGATCTTTCAATAGGTGATCCTCTTGTTGACTTGATACCAATTTATTTAGATGTGTTTAGAGGTGATTCACGTCTCCTTAAGCAGTTTTTAGAAAGTTACAAACTGCCTTTTGTTCTTGAGTCAACAGAGGGTGATCAAAAGTTTGGCCGACTTTCATATCTTGCCATGTGTTATTGTATCTTGCATCATGACAATGTATTGGGAGCTCTTTTTAGCATATGGGAAGAACTGAGGTCAGCACAGTCATGGGAAGAAGTTGAGCTGGCAGTGTGGGGGGAACTGAACAATTACAAAGGCTTTCCGTGA 2874 0.4081 MESRRDRRTEALGDLRVLPDEILCAILERFTPRDVARVACVSSVMYTLCNEEPLWMSLCLKEATGLLQYKGSWKKTVLHNLNLPDKYKEYHRGPLYFDGFNSLFLYRRLYRCHTTLGAFHADTGNVERIKDISLKDFYNEYDAKKPVMLSGLADTWPARHKWTTDQLLLNYGDVAFKISQRGARKISMKFKDYVSYMKVQHDEDPLYIFDEKFGEAAPSLLKDYCVPHLFEEDFFDILDTDKRPSYKWFIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEEDGDVNVETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYHHKGVCRVGLLALDEDGYENVRQNIPCKENNSSYNDLSRKEKRAKTQKDVDGIYNKRAINGVSRSYNLWKDGFSYDINFLSMFLDKDRDHYSSLWSSGNSIGQRELREWLSKLWIQKPKLRELLWKGACIALNANKWLECLSKICAFHNLPPPTDDERLPVGTGSNPVYLVGNTVVKIFVEGGLEASLYGLGTELEFQSRLHEANSPLSKHIPDVLASGIIYLENGSCTNLSWDGKGVPDIIVKNDITSRKCSVDDFSFGVWGRKQLEYRNAGMPVDEAGSLAGNSNTWPYVITKRCAGNMFAELRDKLTWEDTTNLASFLGEQLHHLHLLSYPPPNISSFSDIDHELSLVEANGSMTSVNSKSNVTAEWWLFTRTLAKMRKDVASRLTKWGDPIPSKLIEKIDEYIPPDFAEKFGNYACKPCSWIHTDIMDDNIYMKPSLVCSTPAGNNEDSTMLGNGLLSNHEVKSWCPSHILDFSDLSIGDPLVDLIPIYLDVFRGDSRLLKQFLESYKLPFVLESTEGDQKFGRLSYLAMCYCILHHDNVLGALFSIWEELRSAQSWEEVELAVWGELNNYKGFP 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5191g00002 957 FunFam F-box protein At1g78280 106 363 - -
Vium5191g00002 957 SUPERFAMILY Clavaminate synthase-like 118 370 - -
Vium5191g00002 957 ProSiteProfiles F-box domain profile. 12 58 IPR001810 GO:0005515
Vium5191g00002 957 SUPERFAMILY F-box domain 7 74 IPR036047 GO:0005515
Vium5191g00002 957 Pfam F-box-like 17 61 IPR001810 GO:0005515
Vium5191g00002 957 Gene3D Cupin 111 363 - -
Vium5191g00002 957 Gene3D - 7 89 - -
Vium5191g00002 957 SMART cupin_9 210 373 IPR003347 -
Vium5191g00002 957 SUPERFAMILY Protein kinase-like (PK-like) 663 895 IPR011009 -
Vium5191g00002 957 ProSiteProfiles JmjC domain profile. 215 378 IPR003347 -
Vium5191g00002 957 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 585 - -
Vium5191g00002 957 Pfam Cupin-like domain 143 365 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5191g00002 Vium-Chr5191 23304 33919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5191g00002 4 953 Glycosyltransferase AT1G78280 60.247 0.0 1199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium5191g00002 Cupin_8 3.5e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5191g00002 - - gmx:100792541 1760.35