Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5190g00002 ATGCACCTCCCTTGGTTAGTCAAATATCAATATGCAGCTACACTCTTCTTCGTTACCATTGCCCTCACCAAAGTTTCCTGTTTTCAGTTCAACTTCCCTTTCTTCCCAGATGACTCTAATCTATGGCTGAGCAAGAGTTCAAGTATATTATTTGATGCAATCATAGTAACCCCTGATATTATAGATCCCATAGATCATTATTCTGGACGTGTTTTCTACATAAAGCCATACCAGCTTTGGAAGGAGAAGAGCAACCAAAACCAAATAGCTTCCTTCAACACCACTTTTGTGCTCAACATAACTCCGGAAACTACCCCTGGTGGTGAAGGCTTGGCCTTTATCTTAACTTCAGATAGGACTGTCCCAGAAAACAGTGATGGACAATGGATTGGTATTGTAAATGCTACTTCCAATGGAACTTCACAGCCTGGTATTCTAGCAGTGGAGTTTGACACAAGACACAGTTTCACAGAAGATGGCCCTGACAATCACGTTGGCATCAACATAAACAGCATCAACTCCATCCAACAGGTTTCGTTAATGAACAATCGGCTCAATCTATCTTCAGGTCAAGATGTCAAAATTCACATTCAGTACATAAATGACACAATATCAGTTTTTGGTGCCATGAGTGGAACTTCTGAAGAATCCATGGAGACCCTCTTGGTATCTCCACCTCTTAATTTGTCTTCCTTTCTTCAAAAGGAGGTTTACATTGGTTTCTCGGCCTCAACAAGTAACTACACGCAGCGGAACAGTGTCAGATCGTGGGATTTCAGCGGGGATGATATTAGGGATGATGACAAAAGTCTCTTGTGGGTGGTTTATGTTGGCGTTCCAATCGTGATTGTTTTAATTATCATTGGTGGGTTGGTGATCTTTTTCTTGCGCTGGCAAAAGATTCGCCATATGGAGGGGCCAGAAGATGCATATCCAAGGATAGAGGATCAGATTAAATATTCCACTATGGCTCCAAAGAAGTATAAGCTAAGGGAACTAACGAAAGCAACTGGTGGATTCAGCCTTCAAAACAAGCTTGGACAAGGCGGGTTTGGAACTGTGTATAAGGGACTACTGGAAAATAAGGAGGTAGCTGTAAAGAGAGTTTCCAAAAACTCACGCCAAGGGAAGCAAGAGTTTTTGGCAGAAGTGACAACAATCGGAAGCCTTCACCATAGAAATTTGGTGAAACTCATTGGTTGGTGCTATGAGAATAGAGAGCTTCTCCTTGTATACGAGTTCATGCCTAATGGAAGCCTAGACAAGTACCTCTTTGGTGACAAAGATTGTGGTGATAATTATAACTTTAAAACACTGGACTGGGAAACTAGGCGAAGAGTGATTAATGGGGTGGCTCAAGCACTTGACTACCTTCACGATGGGTGTGAGAAGAGGGTTCTCCACAGAGACATCAAGGCCAGCAACATAATGCTGGACTCAGATTACAATGCCAAGCTGGGAGACTTTGGATTGGCTAGAACAATTCAGAAGAGAAATGAAACGCATCACTCTACAAAAGAGATTGCAGGCACACCCGGGTACATGGCCCCAGAAACGTTTCTCATTGGGAGGGCAACGGTGGAGACAGATGTGTATGCATTTGGGGTTCTTGTGTTGGAAGTAGTGTGTGGAAAGAGGCCAGGGAATGTGTATGCACAAGATGAGTACAAGAACAGCATTGTGTATCGGATATGGGATTTGTATGGGAAGGGAAAAGTAGTTGGTGGTGTTGATGCAAGGTTGAAGAAGGAGGAGATTGTGGAGGAAGAGGTGAACTGCGTTCTTGTTCTTGGTTTGGCTTGCTGCCATCCAAATCCACACAAAAGACCATCGATGAGAACAGTTCTTCAGGTTCTGAATGGGGAAGCAGCTCCACCTGAAGTGCCTAAGGAAAGACCAGTTTTTATGTGGCCTGCTATGCCTCCATCCTTCAAAGATGCTGAAGATAGCTCCCTCATCCAGGGAACTATCACTCCTTTCACTGAAATCACTGGAAGATGA 2001 0.4358 MHLPWLVKYQYAATLFFVTIALTKVSCFQFNFPFFPDDSNLWLSKSSSILFDAIIVTPDIIDPIDHYSGRVFYIKPYQLWKEKSNQNQIASFNTTFVLNITPETTPGGEGLAFILTSDRTVPENSDGQWIGIVNATSNGTSQPGILAVEFDTRHSFTEDGPDNHVGININSINSIQQVSLMNNRLNLSSGQDVKIHIQYINDTISVFGAMSGTSEESMETLLVSPPLNLSSFLQKEVYIGFSASTSNYTQRNSVRSWDFSGDDIRDDDKSLLWVVYVGVPIVIVLIIIGGLVIFFLRWQKIRHMEGPEDAYPRIEDQIKYSTMAPKKYKLRELTKATGGFSLQNKLGQGGFGTVYKGLLENKEVAVKRVSKNSRQGKQEFLAEVTTIGSLHHRNLVKLIGWCYENRELLLVYEFMPNGSLDKYLFGDKDCGDNYNFKTLDWETRRRVINGVAQALDYLHDGCEKRVLHRDIKASNIMLDSDYNAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLIGRATVETDVYAFGVLVLEVVCGKRPGNVYAQDEYKNSIVYRIWDLYGKGKVVGGVDARLKKEEIVEEEVNCVLVLGLACCHPNPHKRPSMRTVLQVLNGEAAPPEVPKERPVFMWPAMPPSFKDAEDSSLIQGTITPFTEITGR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5190g00002 666 FunFam Probable L-type lectin-domain containing receptor kinase S.5 325 414 - -
Vium5190g00002 666 Gene3D - 26 271 - -
Vium5190g00002 666 Pfam Legume lectin domain 29 268 IPR001220 GO:0030246
Vium5190g00002 666 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 260 IPR013320 -
Vium5190g00002 666 CDD STKc_IRAK 346 621 - -
Vium5190g00002 666 Gene3D Transferase(Phosphotransferase) domain 1 415 639 - -
Vium5190g00002 666 Gene3D Phosphorylase Kinase; domain 1 325 414 - -
Vium5190g00002 666 FunFam probable L-type lectin-domain containing receptor kinase S.5 415 625 - -
Vium5190g00002 666 ProSitePatterns Protein kinases ATP-binding region signature. 346 367 IPR017441 GO:0005524
Vium5190g00002 666 SMART serkin_6 340 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5190g00002 666 ProSiteProfiles Protein kinase domain profile. 340 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5190g00002 666 CDD lectin_legume_LecRK_Arcelin_ConA 28 260 IPR001220 GO:0030246
Vium5190g00002 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vium5190g00002 666 SUPERFAMILY Protein kinase-like (PK-like) 321 619 IPR011009 -
Vium5190g00002 666 PANTHER - 58 629 - -
Vium5190g00002 666 Pfam Protein kinase domain 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5190g00002 666 FunFam Probable L-type lectin-domain containing receptor kinase S.5 27 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5190g00002 Vium-Chr5190 10878 13023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5190g00002 15 634 Receptor kinase-like Gene Family AT5G10530 38.629 5.49e-120 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium5190g00002 Pkinase 7.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5190g00002 - - gmx:100785031 1058.13