Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5184g00005 ATGGGTTTACCTTCTCTCCTTCTTGTTTTAACTCCTCTGCTGACATCATTTGCTGTTTGCCAACCTGAAGAGTTTGTGAGCATTGATTGTGGTGGATCAAGCAATTACACTGATAACAGCACGGGTTTGGCATGGATCTCAGACTCTGGGATCATGGAACATGGCATTTCAGTGGAAGTGCAAAGTCCAAATGGAAGCATGGTGCAATATCAAAAGAGGAGAGAGTTTCCCATAGACACCAAGAAGTACTGTTACACGCTGAGCACAGAGGAGAGAAGAAGGTACTTGGTGAGAGCAACTTTTCAGTATGGAAGCTTGGAGAATGGGGACACTTACCCTCAGTTTCAGCTCTACTTGGATGCAACGAAGTGGGCTACTGTGTCAGTATATGATGCCTCAAGAATATATGTTAAGGAAATGATAATCAGGGCACCCTCAAATTCTATTGATGTCTGTGTGTGTTGTGCTACCACTGGTTCTCCCTTCATTTCCACTCTTGAGTTGCGACCCTTCAATCTTTCAATGTATGCCACGGATTTTGAAGACAATTTCTTCTTAGAAGTTGCTGCAAGAATAAATTTTGGCGCACCAACTGAAGATGCTGTCAGGTACCCGGATGATCCATATGATAGAATTTGGGATTCTGATCTAATTAGAAGGCAAAATTATCTTGTTGGGGTAGCCCCAGGCACCGAAAGGATTGGCACTACAATGAACATAGATGTAGAGACAAGAGAATACCCACCTGTTAAAGTAATGCAAACTGCAGTAGTTGGCAGAAAAGGAGTGCTAAGCTACAGATTGAACCTGGAAGACTTCCCTGCCAATGCTCGAGCTTATGCATATTTTGCAGAGATTGAAGATTTGAACAAGAACGAGAGTCGAAAATTCAAATTAAAGCAACCTTATATAGCTGACTATAGCAATGCAGTGGTCAACATTGCTGAGAATGCCAATGGGAGCTACACTTTATATGAACCAAGTTATATGAATGTTACTCTAGAATTTGTTTTATCATTCTCCTTTGTTATGACCCCAGATTCTACCCGAGGACCTCTTCTGAATGCACTGGAAATAAGCAAATATGTAGAGATTGCTTCAAAGACAGACAAACAAGACTCAACCGTTGTAAATGCATTTCGGTTATTGTCTGCTGAAAGTTCCCAGACAAATGAAGGTGATCCTTGTGTTCCAACTCCTTGGGAATGGGTGAATTGTAGTACCACCACACCGCCAAGAATAACAAAAATAATTCTTTCAAGAAGGAATGTGAAAGGGGAAATCCCACCTGAGCTTGGCAACATGGAAGCACTGACAGAGCTGTGGTTAGATGGCAACCTGCTTACTGGACCATTACCTGACATGAGCAAACTGATAAATCTAAAGATTGTGCACTTAGAGAACAACAAGTTGTCTGGTCGATTATCGTCTTACCTTGGTAGTTTGCCAAGCTTACAAGCACTGTTCATACAGAACAACTCATTTAGTGGGGAAATACCGGCTGGATTAGTGTCTGAAAAAATTGTTTTCAGCTTTGAAGGTAATCCTGGACTATACAGAGGGAACAAGAAGCATTTTAAGATGGTGGTGGGAATTTCAATTGGAGTACTAGTGATCCTGTTAATATTCTTCTTGGTAAGTTTGGTGCTATTGCTCAATACGCGGAGAAAGGCATCTCAAAAGAAACGTGAGGAAAAAGGCATTTCTGGACGCAGTAACAGTAGACCTTTAACTGGATACTCATTTCTTCGGGGTGGAAGTTTGATGGATGAAAACACTACTTGCCATATTACACTCTCAGAGTTGAAAGAAGCTACTGACAATTTTTCAGAGAAAATTGGCAAAGGAAGCTTTGGATCTGTTTACTATGGGAAAATGAGAGATGGAAAAGAAATTGCAGTTAAGAGCATGAGTGAATCGTCCTGCCATGGAAACCAGCAATTTGTTAACGAGGTGGCCCTCTTATCCAGAATTCATCACAGAAATTTGGTTCCCTTGATTGGATATTGTGAAGAAGAATGTCAGCATATTCTGGTCTACGAGTATATGCACAATGGCACATTACGGGATCACATTCATGAGAGTTCCAAGAAGAAGAACTTGGACTGGTTAGCTCGTCTTCGTATTGCAGAAGATGCAGCTAAAGGTGTTGAATACTTACACACAGGATGCAATCCTAGCATCATTCACCGTGATATAAAGACAGGTAACATTCTTTTAGACATAAATATGAGAGCAAAAGTATCAGACTTTGGACTCTCTAGGCTAGCTGAAGAAGATTTAACCCATGTATCAAGCATTGCAAGAGGAACTGTGGGCTACTTGGATCCTGAGTACTACGCAAGCCAGCAATTGACAGAAAAGAGTGACGTATACAGTTTTGGAGTTGTTCTGCTGGAACTGATATCTGGAAAGAAACCTGTGTCATCTGAAGATTACGGTGCTGAAATGAACATTGTTCAATGGGCTAGATCATTAACTCGTAAAGGAGATGCAATGAGCATCATTGATCCTTCTCTGAATGGGAATGCTAAAACTGAGTCCATTTGGAGGGTAGTTGAAATAGCCATGCAATGTGTGGAACACCATGGTGCCTCAAGGCCAAGGATGCAAGAAATCATTTTGGCTATACAAGATGCTATCAAGATAGAACAAGGAACAGAAAATAAGCTAAAATCATCATCATCATCATCATTTTCAGGTAGCAGCACTTCAAAGCCACATTCTTCACGCAAAACTTTACTCACAAACTTTCTTGAAATTCAGAGCCCTGACGTTTCAAATGGTTGCCTCCCATCAGCAAGATAA 2808 0.4106 MGLPSLLLVLTPLLTSFAVCQPEEFVSIDCGGSSNYTDNSTGLAWISDSGIMEHGISVEVQSPNGSMVQYQKRREFPIDTKKYCYTLSTEERRRYLVRATFQYGSLENGDTYPQFQLYLDATKWATVSVYDASRIYVKEMIIRAPSNSIDVCVCCATTGSPFISTLELRPFNLSMYATDFEDNFFLEVAARINFGAPTEDAVRYPDDPYDRIWDSDLIRRQNYLVGVAPGTERIGTTMNIDVETREYPPVKVMQTAVVGRKGVLSYRLNLEDFPANARAYAYFAEIEDLNKNESRKFKLKQPYIADYSNAVVNIAENANGSYTLYEPSYMNVTLEFVLSFSFVMTPDSTRGPLLNALEISKYVEIASKTDKQDSTVVNAFRLLSAESSQTNEGDPCVPTPWEWVNCSTTTPPRITKIILSRRNVKGEIPPELGNMEALTELWLDGNLLTGPLPDMSKLINLKIVHLENNKLSGRLSSYLGSLPSLQALFIQNNSFSGEIPAGLVSEKIVFSFEGNPGLYRGNKKHFKMVVGISIGVLVILLIFFLVSLVLLLNTRRKASQKKREEKGISGRSNSRPLTGYSFLRGGSLMDENTTCHITLSELKEATDNFSEKIGKGSFGSVYYGKMRDGKEIAVKSMSESSCHGNQQFVNEVALLSRIHHRNLVPLIGYCEEECQHILVYEYMHNGTLRDHIHESSKKKNLDWLARLRIAEDAAKGVEYLHTGCNPSIIHRDIKTGNILLDINMRAKVSDFGLSRLAEEDLTHVSSIARGTVGYLDPEYYASQQLTEKSDVYSFGVVLLELISGKKPVSSEDYGAEMNIVQWARSLTRKGDAMSIIDPSLNGNAKTESIWRVVEIAMQCVEHHGASRPRMQEIILAIQDAIKIEQGTENKLKSSSSSSFSGSSTSKPHSSRKTLLTNFLEIQSPDVSNGCLPSAR 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5184g00005 935 Pfam Malectin-like domain 28 361 IPR024788 -
Vium5184g00005 935 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524
Vium5184g00005 935 ProSiteProfiles Protein kinase domain profile. 607 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5184g00005 935 FunFam serine/threonine-protein kinase PBS1-like 586 682 - -
Vium5184g00005 935 CDD STKc_IRAK 613 874 - -
Vium5184g00005 935 SUPERFAMILY Protein kinase-like (PK-like) 594 874 IPR011009 -
Vium5184g00005 935 SUPERFAMILY L domain-like 397 504 - -
Vium5184g00005 935 Gene3D Phosphorylase Kinase; domain 1 587 682 - -
Vium5184g00005 935 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 409 499 - -
Vium5184g00005 935 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 683 890 - -
Vium5184g00005 935 SMART serkin_6 607 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5184g00005 935 MobiDBLite consensus disorder prediction 887 911 - -
Vium5184g00005 935 PANTHER OS07G0107800 PROTEIN-RELATED 455 881 - -
Vium5184g00005 935 Pfam Protein tyrosine and serine/threonine kinase 609 874 IPR001245 GO:0004672|GO:0006468
Vium5184g00005 935 Gene3D Transferase(Phosphotransferase) domain 1 683 902 - -
Vium5184g00005 935 Gene3D Ribonuclease Inhibitor 368 515 IPR032675 -
Vium5184g00005 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5184g00005 Vium-Chr5184 104373 109385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5184g00005 1 935 Receptor kinase-like Gene Family AT1G67720 66.773 0.0 1263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium5184g00005 Malectin_like 1.1e-87 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5184g00005 - - vum:124840153 1781.15