Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5184g00004 ATGGGTTTACCTTCTCTCCTTCTTGTTTTAACTCCTCTGCTGACATCATTTGCTGTTTGCCAACCTGAAGAGTTTGTGAGCATTGATTGTGGTGGATCAAGCAATTACACTGATAACAGCACGGGTTTGGCATGGATCTCAGACTCTGGGATCATGGAACATGGCATTTCAGTGGAAGTGCAAAGTCCAAATGGAAGCATGGTGCAATATCAAAAGAGGAGAGAGTTTCCCATAGACACCAAGAAGTACTGTTACACGCTGAGCACAGAGGAGAGAAGAAGGTACTTGGTGAGAGCAACTTTTCAGTATGGAAGCTTGGAGAATGGGGACACTTACCCTCAGTTTCAGCTCTACTTGGATGCAACGAAGTGGGCTACTGTGTCAGTATATGATGCCTCAAGAATATATGTTAAGGAAATGATAATCAGGGCACCCTCAAATTCTATTGATGTCTGTGTGTGTTGTGCTACCACTGGTTCTCCCTTCATTTCCACTCTTGAGTTGCGACCCTTCAATCTTTCAATGTATGCCACGGATTTTGAAGACAATTTCTTCTTAGAAGTTGCTGCAAGAATAAATTTTGGCGCACCAACTGAAGATGCTGTCAGGTACCCGGATGATCCATATGATAGAATTTGGGATTCTGATCTAATTAGAAGGCAAAATTATCTTGTTGGGGTAGCCCCAGGCACCGAAAGGATTGGCACTACAATGAACATAGATGTAGAGACAAGAGAATACCCACCTGTTAAAGTAATGCAAACTGCAGTAGTTGGCAGAAAAGGAGTGCTAAGCTACAGATTGAACCTGGAAGACTTCCCTGCCAATGCTCGAGCTTATGCATATTTTGCAGAGATTGAAGATTTGAACAAGAACGAGAGTCGAAAATTCAAATTAAAGCAACCTTATATAGCTGACTATAGCAATGCAGTGGTCAACATTGCTGAGAATGCCAATGGGAGCTACACTTTATATGAACCAAGTTATATGAATGTTACTCTAGAATTTGTTTTATCATTCTCCTTTGTTATGACCCCAGATTCTACCCGAGGACCTCTTCTGAATGCACTGGAAATAAGCAAATATGTAGAGATTGCTTCAAAGACAGACAAACAAGACTCAACCGTTGTAAATGCATTTCGGTTATTGTCTGCTGAAAGTTCCCAGACAAATGAAGGTGATCCTTGTGTTCCAACTCCTTGGGAATGGGTGAATTGTAGTACCACCACACCGCCAAGAATAACAAAAATAATTCTTTCAAGAAGGAATGTGAAAGGGGAAATCCCACCTGAGCTTGGCAACATGGAAGCACTGACAGAGCTGTGGTTAGATGGCAACCTGCTTACTGGACCATTACCTGACATGAGCAAACTGATAAATCTAAAGATTGTTTTCCTCTTTCAATTGATGACATGCAGGCACTTAGAGAACAACAAGTTGTCTGGTCGATTATCGTCTTACCTTGGTAGTTTGCCAAGCTTACAAGCACTGTTCATACAGAACAACTCATTTAGTGGGGAAATACCGGCTGGATTAGTGTCTGAAAAAATTGTTTTCAGCTTTGAAGGTAATCCTGGACTATACAGAGGGAACAAGAAGCATTTTAAGATGGTGGTGGGAATTTCAATTGGAGTACTAGTGATCCTGTTAATATTCTTCTTGGTAAGTTTGGTGCTATTGCTCAATACGCGGAGAAAGGCATCTCAAAAGAAACGTGAGGAAAAAGGCATTTCTGGACGCAGTAACAGTAGACCTTTAACTGGATACTCATTTCTTCGGGGTGGAAGTTTGATGGATGAAAACACTACTTGCCATATTACACTCTCAGAGTTGAAAGAAGCTACTGACAATTTTTCAGAGAAAATTGGCAAAGGAAGCTTTGGATCTGTTTACTATGGGAAAATGAGAGATGGAAAAGAAATTGCAGTTAAGAGCATGAGTGAATCGTCCTGCCATGGAAACCAGCAATTTGTTAACGAGGTGGCCCTCTTATCCAGAATTCATCACAGAAATTTGGTTCCCTTGATTGGATATTGTGAAGAAGAATGTCAGCATATTCTGGTCTACGAGTATATGCACAATGGCACATTACGGGATCACATTCATGAGAGTTCCAAGAAGAAGAACTTGGACTGGTTAGCTCGTCTTCGTATTGCAGAAGATGCAGCTAAAGGTGTTGAATACTTACACACAGGATGCAATCCTAGCATCATTCACCGTGATATAAAGACAGGTAACATTCTTTTAGACATAAATATGAGAGCAAAAGTATCAGACTTTGGACTCTCTAGGCTAGCTGAAGAAGATTTAACCCATGTATCAAGCATTGCAAGAGGAACTGTGGGCTACTTGGATCCTGAGTACTACGCAAGCCAGCAATTGACAGAAAAGAGTGACGTATACAGTTTTGGAGTTGTTCTGCTGGAACTGATATCTGGAAAGAAACCTGTGTCATCTGAAGATTACGGTGCTGAAATGAACATTGTTCAATGGGCTAGATCATTAACTCGTAAAGGAGATGCAATGAGCATCATTGATCCTTCTCTGAATGGGAATGCTAAAACTGAGTCCATTTGGAGGGTAGTTGAAATAGCCATGCAATGTGTGGAACACCATGGTGCCTCAAGGCCAAGGATGCAAGAAATCATTTTGGCTATACAAGATGCTATCAAGATAGAACAAGGAACAGAAAATAAGCTAAAATCATCATCATCATCATCATTTTCAGGTAGCAGCACTTCAAAGCCACATTCTTCACGCAAAACTTTACTCACAAACTTTCTTGAAATTCAGAGCCCTGACGTTTCAAATGGTTGCCTCCCATCAGCAAGATAA 2835 0.4102 MGLPSLLLVLTPLLTSFAVCQPEEFVSIDCGGSSNYTDNSTGLAWISDSGIMEHGISVEVQSPNGSMVQYQKRREFPIDTKKYCYTLSTEERRRYLVRATFQYGSLENGDTYPQFQLYLDATKWATVSVYDASRIYVKEMIIRAPSNSIDVCVCCATTGSPFISTLELRPFNLSMYATDFEDNFFLEVAARINFGAPTEDAVRYPDDPYDRIWDSDLIRRQNYLVGVAPGTERIGTTMNIDVETREYPPVKVMQTAVVGRKGVLSYRLNLEDFPANARAYAYFAEIEDLNKNESRKFKLKQPYIADYSNAVVNIAENANGSYTLYEPSYMNVTLEFVLSFSFVMTPDSTRGPLLNALEISKYVEIASKTDKQDSTVVNAFRLLSAESSQTNEGDPCVPTPWEWVNCSTTTPPRITKIILSRRNVKGEIPPELGNMEALTELWLDGNLLTGPLPDMSKLINLKIVFLFQLMTCRHLENNKLSGRLSSYLGSLPSLQALFIQNNSFSGEIPAGLVSEKIVFSFEGNPGLYRGNKKHFKMVVGISIGVLVILLIFFLVSLVLLLNTRRKASQKKREEKGISGRSNSRPLTGYSFLRGGSLMDENTTCHITLSELKEATDNFSEKIGKGSFGSVYYGKMRDGKEIAVKSMSESSCHGNQQFVNEVALLSRIHHRNLVPLIGYCEEECQHILVYEYMHNGTLRDHIHESSKKKNLDWLARLRIAEDAAKGVEYLHTGCNPSIIHRDIKTGNILLDINMRAKVSDFGLSRLAEEDLTHVSSIARGTVGYLDPEYYASQQLTEKSDVYSFGVVLLELISGKKPVSSEDYGAEMNIVQWARSLTRKGDAMSIIDPSLNGNAKTESIWRVVEIAMQCVEHHGASRPRMQEIILAIQDAIKIEQGTENKLKSSSSSSFSGSSTSKPHSSRKTLLTNFLEIQSPDVSNGCLPSAR 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5184g00004 944 Pfam Protein tyrosine and serine/threonine kinase 618 883 IPR001245 GO:0004672|GO:0006468
Vium5184g00004 944 SUPERFAMILY L domain-like 397 512 - -
Vium5184g00004 944 ProSiteProfiles Protein kinase domain profile. 616 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5184g00004 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Vium5184g00004 944 CDD STKc_IRAK 622 883 - -
Vium5184g00004 944 ProSitePatterns Protein kinases ATP-binding region signature. 622 644 IPR017441 GO:0005524
Vium5184g00004 944 Pfam Malectin-like domain 28 361 IPR024788 -
Vium5184g00004 944 Gene3D Transferase(Phosphotransferase) domain 1 692 911 - -
Vium5184g00004 944 SMART serkin_6 616 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5184g00004 944 FunFam serine/threonine-protein kinase PBS1-like 595 691 - -
Vium5184g00004 944 SUPERFAMILY Protein kinase-like (PK-like) 603 883 IPR011009 -
Vium5184g00004 944 Gene3D Phosphorylase Kinase; domain 1 596 691 - -
Vium5184g00004 944 Gene3D Ribonuclease Inhibitor 368 525 IPR032675 -
Vium5184g00004 944 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 692 899 - -
Vium5184g00004 944 PANTHER OS07G0107800 PROTEIN-RELATED 474 890 - -
Vium5184g00004 944 MobiDBLite consensus disorder prediction 896 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5184g00004 Vium-Chr5184 104373 109388 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5184g00004 1 944 Receptor kinase-like Gene Family AT1G67720 66.139 0.0 1255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium5184g00004 Malectin_like 1.1e-87 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5184g00004 - - vum:124840153 1807.73