Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5182g00001 ATGGAAAGCAGAGTGGTATTTGAGAGTGATCTGAACCTCAAGGCAACAGAACTTAGATTAGGGTTGCCAGGGACAGAGGAAAAGGAAGACAAGAACCTGCGTACACATGCTGTTCTTAGAAACAACAAAAGACAAGTGCGTGAAACTTCTCAAGACTCCATTTCCATTTCCATTTCCAATGCTTCACATCACCAACAACACGTAGAGACTGTTTCAGCTCCTCCACCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAGAACAGTGTGCAGGAGGGCGAGGGGGATGGGATCTTTGTGAAAGTGAGCTTGGATGGAGCACCTTACCTCAGAAAAATTGACTTGAAAGTCTACAGGGGTTATCCAGAACTACTCAAAGCTTTAGAAACCATGTTCAAGTTGGCCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGGTCTGAATATGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGTGATTTCTTGCAAAAGGCTAAGAATCATGAAAGGCTCGGAAGCAAGTGGGCTGGGTTGTGTTGTATGA 597 0.4523 MESRVVFESDLNLKATELRLGLPGTEEKEDKNLRTHAVLRNNKRQVRETSQDSISISISNASHHQQHVETVSAPPPKAKIVGWPPIRSYRKNSVQEGEGDGIFVKVSLDGAPYLRKIDLKVYRGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVISCKRLRIMKGSEASGLGCVV 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5182g00001 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 193 IPR003311 GO:0005634|GO:0006355
Vium5182g00001 198 Pfam AUX/IAA family 16 195 IPR033389 -
Vium5182g00001 198 ProSiteProfiles PB1 domain profile. 101 188 IPR000270 GO:0005515
Vium5182g00001 198 FunFam Auxin-responsive protein 96 198 - -
Vium5182g00001 198 Gene3D - 96 198 - -
Vium5182g00001 198 SUPERFAMILY CAD & PB1 domains 91 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5182g00001 Vium-Chr5182 7786 9715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5182g00001 104 194 B3 DNA Binding Superfamily AT2G46530 37.363 1.25e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium5182g00001 AUX_IAA 1.4e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5182g00001 K14484 - gmx:100800212 309.301